1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaatttaaattgaatcattttaaaaaaaatcatgtaaatgttgtctgtgttctctactgtgccttattgtattgaatatagtttggattttgttgggcagTATGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTA
species | Vitis vinifera |
transcript | Vv06s0004g00180.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCCCATAAGGCTTGAAGGCCTTGCATATTCTCATGGTGCCTTTACCAGC TATGAACCAGAAGTGTTCCEST: gi|110721938|gb|EE097741.1|EE097741
genomic: TCCCCATAAGGCTTGAAGGCCTTGCATATTCTCATGGTGCCTTTTCCAGCgtaagtgatg ... tgttgggcagTATGAACCAGAATTGTTCC
EST: TCCCCATAAGGCTTGAAGGCCTTGCATATTCTCATGGTGCCTTTTCCAGC TATGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAA-GEST: gi|110724394|gb|EE100183.1|EE100183
genomic: TCCCCATAAGGCTTGAAGGCCTTGCATATTCTCATGGTGCCTTTTCCAGCgtaagtgatg ... tgttgggcagTATGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAG
EST: TCCCCATAAAGCTTGAAGGCCTTGCATATTCTCATGGTGCCTTTTCCAGC TATGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAG
genomic: TCCCCATAAGGCTTGAAGGCCTTGCATATTCTCATGGTGCCTTTTCCAGCgtaagtgatg ... tgttgggcagTATGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAG
tgtgttctctactgtgccttattgtattgaatatagtttggattttgttgggcagTATGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTA
ttttgtt CT-rich tract
ttattgtattgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatttaaattgaatcattttaaaaaaaatcatgtaaatgttgtctgtgttctctactgtgccttattgtattgaatatagtttggattttgttgggcagTATGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - aaattga
- - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - -tcatgta
- - - - - - - - - - - - - - - - - - - - -tgtctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctta