Sequence
atgc intronic sequence ATGC exonic sequence...gatatgctgtgaacttgctgtccttttctgcttcttgatacatgcctatctttaagttactttgaagtgttgacacttattttttttgttgtttctgcagGAGAATGATGTAGCTGAAAATACTGAGGGATTGTCAAGGGAAGAGTTGGGCCGCCTTGTTGCTTCTCGTTGGACAGGGGAAAATACTGGGCAGCACACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g00140.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G02950.1 (Glycine max), 3'ss of exon 5
gatatgctgtgaacttgctgtccttttctgcttcttgatacatgcctatctttaagttactttgaagtgttgacacttatttttt-ttgttgtttctgcagGAGAATGATGTAGCTGAAAATACTGAGGGATTGTCAAGGGAAGAGTTGGGCCGCCTTGTTGCTTCTCGTTGGACAGGGGAAAATACTGGGCAGCACACTG
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gttatgg-gtgatattttagctaagaaatatcttcaactttgcaattttcttccgcttgccttttctgcttgttattttctctttgttggcatatctgtagGGGAATGATGCATCTGAAAATACTGAGGGATTATCAAGGGAAGAATTGGGCCGGCTTGTTGCTTCACGTTGGACAGGAGAAAATACTGATAAGCCAAGTG
upper sequence: Vv06s0004g00140.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G35090.1 (Glycine max), 3'ss of exon 8
gatatgctgtgaacttgctgtccttttctgcttcttgatacatgcctatctttaagttactttgaagtgttgacacttatttttt-ttgttgtttctgcagGAGAATGATGTAGCTGAAAATACTGAGGGATTGTCAAGGGAAGAGTTGGGCCGCCTTGTTGCTTCTCGTTGGACAGGGGAAAATACTGGGCAGCACACTG
| |||| |||| || | | | | | | |||| || || || | || | ||| ||| | |||| ||| |||||||| | |||||||||| |||||||| |||||||||||||||||||| ||||||||||| || |||||||| |||||||||| || | ||
gttatgg-gtgatattttagctaagaaatatcttcaacttcgcagttttcttccgcttgtcttttctgtctgttattttctctttgttggcatatctgtagGGGAATGATGCATCTGAAAATACCGAGGGATTATCAAGGGAAGAGTTGGGCCGGCTTGTTGCTTCACGCTGGACAGGAGAAAATACTGATAAGTCAAGTG
upper sequence: Vv06s0004g00140.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G56360.1 (Arabidopsis thaliana), 3'ss of exon 7
gatatgctgtgaacttgctgtccttttctg-----cttcttgatacatgcctatctttaagttactttgaagtgttgacacttattttttttgttgtttctgcagGAGAATGATGTAGCTGAAAATACTGAGGGATTGTCAAGGGAAGAGTTGGGCCGCCTTGTTGCTTCTCGTTGGACAGGGGAAAATACTGGGCAGCACACTG
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-gcattttttcaataactctaccccttctgagttatatctcggagattattgaattcctgactttttcctaacgttagag----tactctacattctatcgatagGAGGATTTTGTAACCGAGAAGAAGGAAGAGTTGTCAAAGGAAGAGTTGGGGCGTCTTGTTGCCTCTCGTTGGACAGGAGAGAAATCTGATAAGCCAACTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatctttaagttactttgaagtgttgacacttattttttttgttgtttctgcagGAGAATGATGTAGCTGAAAATACTGAGGGATTGTCAAGGGAAGAGTTGGGCCGCCTTGTTGCTTCTCGTTGGACAGGGGAAAATACTGGGCAGCACACTG
tgttgac putative branch site (score: 3)
cttattttttttgttg CT-rich tract
ttattttttttgttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatatgctgtgaacttgctgtccttttctgcttcttgatacatgcctatctttaagttactttgaagtgttgacacttattttttttgttgtttctgcagGAGAATGATGTAGCTGAAAATACTGAGGGATTGTCAAGGGAAGAGTTGGGCCGCCTTGTTGCTTCTCGTTGGACAGGGGAAAATACTGGGCAGCACACTG
- tatgctg
- - - - - - - - gctgtcc
- - - - - - - - - - - - - -ctgcttc
- - - - - - - - - - - - - - - - - - - - catgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgac