1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttaatccttcttgattcagatgatagagaataaccaatgaaagctgaaattctttctatgcctgcatggctgttctgaccatgtatcttcacatatagGCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGATTTTGAGGATGCAGCCAAGCGAGTGTGCGAGACTAAACTTGAAGATGCCA
species | Vitis vinifera |
transcript | Vv05s0094g01630.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GACAGAAGAATTTGTTTGTTGCTTCATTTTTCTTTGACAGAGCTGCTGAG GCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGATEST: gi|71875371|gb|DT024426.1|DT024426
genomic: GACAGAAGAATTTGTTTGTTGCTTCATTTTTCTTTGACAGAGCTGCTGAGgtatttaatc ... tcacatatagGCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGAT
EST: GACAGAAGAATTTGTTTGTTGCTTCATTTTTCTTTGACAGAGCTGCTGAG GCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGATEST: gi|110357997|gb|EC921895.1|EC921895
genomic: GACAGAAGAATTTGTTTGTTGCTTCATTTTTCTTTGACAGAGCTGCTGAGgtatttaatc ... tcacatatagGCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGAT
EST: GACAGAAGAATTTGTTTGTTGCTTCATTTTTCTTTGACAGAGCTGCTGAG GCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGATEST: gi|110418833|gb|EC985013.1|EC985013
genomic: GACAGAAGAATTTGTTTGTTGCTTCATTTTTCTTTGACAGAGCTGCTGAGgtatttaatc ... tcacatatagGCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGAT
EST: GACAGAAGAATTTGTTTGTTGCTTCATTTTTCTTTGACAGAGCTGCTGAG GCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGATEST: gi|110358562|gb|EC922863.1|EC922863
genomic: GACAGAAGAATTTGTTTGTTGCTTCATTTTTCTTTGACAGAGCTGCTGAGgtatttaatc ... tcacatatagGCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGAT
EST: GACAGAAGAATTTGTTTGTTGCTTCATTTTTCTTTGACAGAGCTGCTGAG GCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGAT
genomic: GACAGAAGAATTTGTTTGTTGCTTCATTTTTCTTTGACAGAGCTGCTGAGgtatttaatc ... tcacatatagGCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGAT
ctgaaattctttctatgcctgcatggctgttctgaccatgtatcttcacatatagGCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGATTTTGAGGATGCAGCCAAGCGAGTGTGCGAGACTAAACTTGAAGATGCCA
ttctgac putative branch site (score: 2)
tatcttc putative PPT
attcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttaatccttcttgattcagatgatagagaataaccaatgaaagctgaaattctttctatgcctgcatggctgttctgaccatgtatcttcacatatagGCTGGATTCGTTGATCGCAACCAGCCTGTAGCCAAAGTTCAGCCTATGGATTTTGAGGATGCAGCCAAGCGAGTGTGCGAGACTAAACTTGAAGATGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG