1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcatatattcctttgacaattggtggttgagaaataacatgattctttgcatcggatcttagatggggaaacactaatgatctgggttaatatttttcagACTAGTGGCCTTCGTTCACACACTCTATCCATGGTTGTAAATAATGCTCCTGGAGTTCTTAATCTTGTTACTGGGGTTTTTGCAAGGAGGGGATATAACA
species | Vitis vinifera |
transcript | Vv05s0094g01110.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATTCAATAAAGCTCTTGATGCTCACTGGGGTGTTCTCTATGATGAAGAT ACTAGTGGCCTTCGTTCACACACTCTATCCATGGTTGTAAATAATGCTCCTEST: gi|30301279|gb|CB978073.1|CB978073
genomic: TATTCAATAAAGTTCTTGATGCTCACTGGGGTGTTCTCTATGATGAAGATgtaaggaagc ... tatttttcagACTAGTGGCCTTCGTTCACACACTCTATCCATGGTTGTAAATAATGCTCCT
EST: TATTCAATAAAGTTCTTGATGCTCACTGGGGTGTTCTCTATGATGAAGAT ACTAGTGGCCTTCGTTCACACACCCTATCCATGGTTGTAAATAATGCTCCTEST: gi|110362279|gb|EC925800.1|EC925800
genomic: TATTCAATAAAGTTCTTGATGCTCACTGGGGTGTTCTCTATGATGAAGATgtaaggaagc ... tatttttcagACTAGTGGCCTTCGTTCACACACTCTATCCATGGTTGTAAATAATGCTCCT
EST: TATTCAATAAAGTTCTTGATGCTCACTGGGGTGTTCTCTATGATGAAGAT ACTAGTGGCCTTCGTTCACACACTCTATCCATGGTTGTAAATAATGCTCCTEST: gi|33404575|gb|CF210202.1|CF210202
genomic: TATTCAATAAAGTTCTTGATGCTCACTGGGGTGTTCTCTATGATGAAGATgtaaggaagc ... tatttttcagACTAGTGGCCTTCGTTCACACACTCTATCCATGGTTGTAAATAATGCTCCT
EST: CACTGGGGTGTTCTCTATGATGAAGAT ACTAGTGGCCTTCGTTCACACACTCTATCCATGGTTGTAAATAATGCTCCTEST: gi|110690986|gb|EE068568.1|EE068568
genomic: CACTGGGGTGTTCTCTATGATGAAGATgtaaggaagc ... tatttttcagACTAGTGGCCTTCGTTCACACACTCTATCCATGGTTGTAAATAATGCTCCT
EST: TAT-CAATAAAGTTCTTGATGCTCACTGGGGTGTTCTCTATGATGAAGAT ACTAGTGGCCTTCGTTCACACACTCTATCCATGGTTGTAAATAATGCTCCT
genomic: TATTCAATAAAGTTCTTGATGCTCACTGGGGTGTTCTCTATGATGAAGATgtaaggaagc ... tatttttcagACTAGTGGCCTTCGTTCACACACTCTATCCATGGTTGTAAATAATGCTCCT
tttgcatcggatcttagatggggaaacactaatgatctgggttaatatttttcagACTAGTGGCCTTCGTTCACACACTCTATCCATGGTTGTAAATAATGCTCCTGGAGTTCTTAATCTTGTTACTGGGGTTTTTGCAAGGAGGGGATATAACA
tatttttc CT-rich tract
ttaatatttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatatattcctttgacaattggtggttgagaaataacatgattctttgcatcggatcttagatggggaaacactaatgatctgggttaatatttttcagACTAGTGGCCTTCGTTCACACACTCTATCCATGGTTGTAAATAATGCTCCTGGAGTTCTTAATCTTGTTACTGGGGTTTTTGCAAGGAGGGGATATAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - gtggttg
- - - - - - - - - - - - - - - gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaca