Sequence
atgc intronic sequence ATGC exonic sequencegtaatcttctgaaccatgtaaatggataattgtctggtttctgctaggggtgataagaatatatttgagttctaatgacatctacattttgggcagTGTGATGTTTTCATATATGTCTCTTGTGCCCAAACTGCTCTCTTGGATAGTAAAGAATTCCTAGCTCCAGTAATTACTCCTTTCGAAGCGATGCTTGCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g00370.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os11g16430.1 (Oryza sativa), 3'ss of exon 7
gtaatcttctgaaccatgtaaatggataattgtctggtttc--tgctaggggtgataagaatatatttgagttctaatgacatctacattttg----ggcagTGTGATGTTTTCATATATGTCTCTTGTGCCCAAACTGCTCTCTTGGATAGTAAAGAATTCCTAGCTCCAGTAATTACTCCTTTCGAAGCGATGCTTGCTT
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---------------gtgctactgagttctaatatgttttctctgcttttcatgttaaggata-actgactcaccattctttttttttttttggtatggcagTGTGAAGTTTTTGTTTATGTTTCTTGTGCCCAAACTGCTCTATTGGATAGCAAAGATTTTTTAGCTCCAGTCATTACGCCTTTCGAAGCTGTATTAGCTT
upper sequence: Vv05s0094g00370.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AC217358.3_FGT003 (Zea mays), 3'ss of exon 7
gtaatcttctgaaccatgtaaatggataattgtctggtttctgctaggggtgataagaatatatttgagttctaatgacatctacattttgggcagTGTGATGTTTTCATATATGTCTCTTGTGCCCAAACTGCTCTCTTGGATAGTAAAGAATTCCTAGCTCCAGTAATTACTCCTTTCGAAGCGATGCTTGCTT
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--------gtgtgctactttaatcagctctgaactgtttttttctc----tgttaacca-attgatgccatctgacattgtttttccttggagcagTGCGAAGTTTTTATTTATGTTTCTTGTGCCCAAACTGCTCTGCTGGATAGCAAGGATTTTTTAGCTCCAGTTATTACACCTTTTGAAGCTGTACTAGCTT
upper sequence: Vv05s0094g00370.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G44190.1 (Glycine max), 3'ss of exon 9
gtaatcttctgaaccatgtaaatggataattgtctggtttctgctaggggtgataagaatatatttgagttctaatgacatctacattttgggcagTGTGATGTTTTCATATATGTCTCTTGTGCCCAAACTGCTCTCTTGGATAGTAAAGAATTCCTAGCTCCAGTAATTACTCCTTTCGAAGCGATGCTTGCTT
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gtgaagtttattacattcttagtaaatactt---tagtctgctttacgtctgaaaa--------------ctttctaacagtttgatttttatcagTGCGATGTTTTTCTATACGTTTCTTGTGCCCAAACTGCTCTGTTGGATAGCAAAGAGTATCTAGCTCCAGTTATTACTCCCTTCGAAGCAATGATAGCTT
upper sequence: Vv05s0094g00370.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G01090.1 (Glycine max), 3'ss of exon 7
gtaatcttctgaaccatgtaaatggataattgtctggtttctgctaggggtgataagaatatatttgagttctaatgacatctacattttgggcagTGTGATGTTTTCATATATGTCTCTTGTGCCCAAACTGCTCTCTTGGATAGTAAAGAATTCCTAGCTCCAGTAATTACTCCTTTCGAAGCGATGCTTGCTT
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---------------gtgaagtttattacattcttagaatatactttagtctgcctttacgtctgaaaactttc-taacagtttgatttttatcagTGCGATGTTTTTCTATACGTTTCTTGTGCCCAAACTGCTCTGCTGGATAGCAAAGAGTATCTAGCTCCAGTTATTACTCCCTTCGAAGCAATGATAGCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctaggggtgataagaatatatttgagttctaatgacatctacattttgggcagTGTGATGTTTTCATATATGTCTCTTGTGCCCAAACTGCTCTCTTGGATAGTAAAGAATTCCTAGCTCCAGTAATTACTCCTTTCGAAGCGATGCTTGCTT
ttctaat putative branch site (score: 2)
tgataagaatatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatcttctgaaccatgtaaatggataattgtctggtttctgctaggggtgataagaatatatttgagttctaatgacatctacattttgggcagTGTGATGTTTTCATATATGTCTCTTGTGCCCAAACTGCTCTCTTGGATAGTAAAGAATTCCTAGCTCCAGTAATTACTCCTTTCGAAGCGATGCTTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA