1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ggaagtctttgcatgtgatcaaggaggttcttctttattttcttttttgaatagtagtttgtcctgtcatggtattcacatcaactttgtttccttatagGTAGATGCAGCATTAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAAT
species | Vitis vinifera |
transcript | Vv05s0077g01210.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGATTGAGCTTATTGATGCTAAAACGAAGGAACCAAAAGATGCATTGGAG GTAGATGCAGCATTAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTEST: gi|351031178|gb|FQ445005.1|FQ445005
genomic: GGATTGAGCTTATTGATGCTAAAACGAAGGAACCAAAAGATGCATTGGAGgtaattttgt ... ttccttatagGTAGATGCAGCATTAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTT
EST: GGATTGAGCTTATTGATGCTAAAACGAAGGAACCAAAAGATGCATTGGAG GTAGATGCAGCATTAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTEST: gi|351023248|gb|FQ432631.1|FQ432631
genomic: GGATTGAGCTTATTGATGCTAAAACGAAGGAACCAAAAGATGCATTGGAGgtaattttgt ... ttccttatagGTAGATGCAGCATTAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTT
EST: GGATTGAGCTTATTGATGCTAAAACGAAGGAACCAAAAGATGCATTGGAG GTAGATGCAGCATTAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTT
genomic: GGATTGAGCTTATTGATGCTAAAACGAAGGAACCAAAAGATGCATTGGAGgtaattttgt ... ttccttatagGTAGATGCAGCATTAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTT
tttgaatagtagtttgtcctgtcatggtattcacatcaactttgtttccttatagGTAGATGCAGCATTAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAAT
ctttgtttccttat CT-rich tract
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaagtctttgcatgtgatcaaggaggttcttctttattttcttttttgaatagtagtttgtcctgtcatggtattcacatcaactttgtttccttatagGTAGATGCAGCATTAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - -catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcaac