Sequence
atgc intronic sequence ATGC exonic sequencegtaagtttggatagatttcatgcatatgggcagatgcaaatatttggtcttgaaaataacaataaaataatcacatccaacctcttctgttcttgtcattgtgacgttttagccctttagtatcattgtgtctttttaatgataaaataattcatttttatgcagCAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G15270.1 (Glycine max), 3'ss of exon 6
gtaagtttggatagatttcatgcatatgggcagatgcaaatatttggtcttgaaaataacaataaaataatcacatccaacctcttctgttcttgtcattgtgacgttttagccctttagtatcattgtgtctttttaatgataaa--ataattcattttt---atgcagCAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCA
| || | | | | || ||| || ||| ||||| | || ||| | |||| || ||||| | ||| ||||||||||| ||||| ||||| ||||| | ||||| | || |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||
----------------------------------------------------------------------gtatgtcagagtaccttagaaattagaattatgtaaatttcatccttttttctccctgtatattttagatttccctttgtaatttacatttccaatgcagCAAGATTTTTTTGGGAAGCTCATGGATGTTTTTAGAGTTTGTGAAGACTTGGAAAATATGGATGGCCTTCACATGATTTACAAAATAGTCAAAGGGATCA
upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G37040.1 (Glycine max), 3'ss of exon 5
gtaagtttggatagatttcatgcatatgggcagatgcaaatatttggtcttgaaaataacaataaaataatcacatccaacctcttctgttcttgtcattgtgacgttttagccctttagtatcattgtgtctttttaatgataaaataattcatttttatgcagCAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCA
| | || | ||| | | || | ||| ||| || || | | | | | | | | | | | |||||||||| ||||| | ||||||||||| |||| || || || |||||||||||||| || ||||||||||||||||| | ||| || |||||||||||
---------------------------------------------------------------gcagccccctgctcttgtcatgtctaatgcagctgaaatggcacttttctgcttgtacatt-ttatatatgcatcctttttcaccggtgtttatat-tgcagCAAGAGTTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTG
upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G03570.1 (Glycine max), 3'ss of exon 7
gtaagtttggatagatttcatgcatatgggcagatgcaaatatttggtcttgaaaataacaataaaataatcacatccaacctcttctgttcttgtcattgtgac-gttttagccctttagtatcattgtgtctttttaatgataaaata-attcattttta---tgcagCAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCA
||||| | | || ||| | | || | | | || |||| | | ||| | || | | | | | |||| ||||||||| |||||| | ||||||||||| |||| || || || |||||||||||||| || ||||||||||||||||| | ||| || |||||||||||
----------------------------------------------------------------------tcacagtcccctgctcttgtcatctcctatgcagctggaatggcacttttctgctagtgtattttatgtgcatcctttttcactggtctttaaattgcagCAAGCATTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTG
upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G04260.1 (Glycine max), 3'ss of exon 7
gtaagtttggatagatttcatgcatatgggcagatgcaaatatttggtcttgaaaataacaataaaataatcacatccaacctcttctgtt-cttgtcattgtgacgttttagccctttagtatcattgtgtctttttaatgat----aaaataattcattttt---atgcagCAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCA
|| | ||| | || ||| || ||| ||||| | || |||| | | ||| | | ||||| || ||| ||||||||||| ||||| ||||| ||||| | ||||| | || |||||||||||||| ||||||||||||||| |||| | ||| || ||||||||||
-------------------------------------------------------------------------tgtcagagtgctttagaaatttaggattatgtaaatttcatccttttttttccttgtatatattttagatttccctttgtaatttatatttccaatgcagCAAGATTTTTTTAGGAAGCTCATGGAAGTTTTTAGAGTTTGTGAAGACTTGGAAAATATGGATGGCCTTCACCTGATTTTCAAAATAATCAAAGGGATTG
upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G06670.2 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtttggatagatttcatgcatatgggcagatgcaaatatttggtcttgaaaataacaataaaataatcacatccaacctcttctgttcttgtcattgtgacgttttagccctttagtatcat--tgtgtctttttaatgataaaataattcatttttatgcagCAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCA
||| | | | || | | | | || | ||| | | | | |||||| || || | || | | | | || || ||||||| || || |||| || ||||||| | |||| |||||||| ||||||||||| | ||||||||||||||||||| ||| |||||||| || ||||
-----------------------------------------------------------------tgtaagctcgtt--actttatatactgttattattatagtttatcatgtctttagaattatattctggaaacctccttactctaccttttcccttgctgcagCATGATTTCTTCCGGAATCTGATGGGTGTTTTTAAAATATGCGAGGACTTGGAAAATGTTGATGGCCTTCACATGATATTCAACATTGTCAAGGGAATCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188632|gb|CF607981.1|CF607981EST: AGAGTGGCATTGCTGAGCAGATACGCCTGACTGAACTTATTTTAAACGAT CAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTG
genomic: AGAGTGGCATTGCTGAGCAGATACGCCTGACTGAACTTATTTTAAACGATgtaagtttgg ... ttttatgcagCAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agccctttagtatcattgtgtctttttaatgataaaataattcatttttatgcagCAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCA
ttttaat putative branch site (score: 3)
ttcattttt putative PPT
attgtgtctttttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtttggatagatttcatgcatatgggcagatgcaaatatttggtcttgaaaataacaataaaataatcacatccaacctcttctgttcttgtcattgtgacgttttagccctttagtatcattgtgtctttttaatgataaaataattcatttttatgcagCAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA