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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgcccctaaatctcttaagtttgattcatggagttccatccatgatattctgattctaatagtaagttttttgttgaacagATGATGTGGCGGCTTAATTTCTTGGTGTTGTTTTGCTGTGTTGTCCTTAATAACAGCTATATGCTATACTACATTTGCCCCATGCACACTCTTTTCACTC

Basic information

species Vitis vinifera
transcript Vv05s0077g00620.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G36550.1 (Glycine max), 3'ss of exon 7
gtaactgcccctaaatctcttaagtttgattcatggagttccatccatgatattctgattctaata---gtaagttttttgttgaacagATGATGTGGCGGCTTAATTTCTTGGTGTTGTTTTGCTGTGTTGTCCTTAATAACAGCTATATGCTATACTACATTTGCCCCATGCACACTCTTTTCACTC
      |     || |  ||| |  |  ||  | |        | ||| |||||  || | |||||   | ||  | |||||||| |||||||||||||||||||||||||| ||| |||| || ||| |||| ||||| ||||| || ||| |||||||||| |||||||||||||||||||||||||
------gtatgcaatttccttgaact--ataaaagctcgctttttcat-atatttggactgtaataactgcaacatatttgttgagcagATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCTGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTC

upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G04070.1 (Glycine max), 3'ss of exon 7
gtaactgcccctaaatctcttaagtttgattcatggagttccatccatgatattctgattctaatagtaagttttttgttgaacagATGATGTGGCGGCTTAATTTCTTGGTGTTGTTTTGCTGTGTTGTCCTTAATAACAGCTATATGCTATACTACATTTGCCCCATGCACACTCTTTTCACTC
      |     || |  ||| |  |  |      || ||      ||  |  |||| | ||||  | ||  | || ||||| |||||||||||||||||||||||||| ||| ||||  | ||| |||| ||||| ||||| || ||| |||||||||| |||||||||||||||||||||||||
------gtatgcaatttccttgaactataaaagctgactttttaatatt-tggtctg-tactaactgcaacatattggttgagcagATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCAGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTC

upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G06550.2 (Arabidopsis thaliana), 3'ss of exon 7
gtaactgcccctaaatctcttaagtttgattcatggagttccatccatgatattctgattctaatagtaagttttttgttgaacagATGATGTGGCGGCTTAATTTCTTGGTGTTGTTTTGCTGTGTTGTCCTTAATAACAGCTATATGCTATACTACATTTGCCCCATGCACACTCTTTTCACTC
||||  ||   ||  ||      | ||  ||| |  | ||    |  | |  | ||     |  ||  |  || || ||  | ||||||||||||||||| |||||| ||||  | || | |||  | ||||| || ||||| || |||||||||||||| ||||| ||||||||||| || ||||
gtaagagc---tatgtcctcccggcttttttctt--atttttggctgtcacctacttgaaattctaacatattcttggtcta-cagATGATGTGGCGGCTAAATTTCCTGGTCATATTCTCCTGCATCGTCCTCAACAACAGTTACATGCTATACTACATCTGCCCAATGCACACTCTGTTTACTC

upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EDP02440 (Chlamydomonas reinhardtii), 3'ss of exon 4
-------------------gtaactgcccctaaatctcttaagtttg-attcatggagttcca----tccatgatattctgattctaatagtaagttttttgttgaacagATGATGTGGCGGCTTAATTTCTTGGTGTTGTTTTGCTGTGTTGTCCTTAATAACAGCTATATGCTATACTACATTTGCCCCATGCACACTCTTTTCACTC
                   | | | ||  ||| |  ||   |  ||| | || |    | ||     | |  | |   |     |     ||    |     | |  |||||||||||||| || || ||| ||||||| ||    || || || || || |||||||| ||||| |||||||| ||||||||||||||           
gcgtttgctggcacgcgctgaagccgctgctagacttccacaccttgcactcgtctcatccccacgcttcccgcttcccgacaccccgcggttccctcagATTCGCGCAGATGATGTGGCGCCTCAACTTCATGGTGTTCTTCACGTGCGTGGTGCTCAACAACAGCTACATGCTCTACTACATCTGCCCCATGCACACC----------

upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S5_239V6.1 (Physcomitrella patens), 3'ss of exon 7
---gtaactgcccctaaatctct-----taagtttgattcatgg--agttccatccatgatattctgattctaatagtaa----gttttttg-ttgaacagATGATGTGGCGGCTTAATTTCTTGGTGTTGTTTTGCTGTGTTGTCCTTAATAACAGCTATATGCTATACTACATTTGCCCCATGCACACTCTTTTCACTC
   |  |    |  | |   | |      |||| |  | |||    |||| | ||   |||| || || ||    | | |    |||   || ||   ||||||||||||||||| |||||| |||| || ||| ||||  |||| || || ||   ||| ||||| |||||||| || || ||||||||||| |||||||
ttcgcgatctgctttgagggtgtggaatcaagtatcgtccattcttagttgcttctg-gataatcggagtcatgcactgactgggttcgatgatttggcagATGATGTGGCGGCTCAATTTCCTGGTCTTCTTTAGCTGCATTGTACTGAACAATGACTACATGCTCTACTACATCTGTCCAATGCACACTCTCTTCACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catggagttccatccatgatattctgattctaatagtaagttttttgttgaacagATGATGTGGCGGCTTAATTTCTTGGTGTTGTTTTGCTGTGTTGTCCTTAATAACAGCTATATGCTATACTACATTTGCCCCATGCACACTCTTTTCACTC
                           ttctaat  putative branch site (score: 2)
                                        ttttttgtt  putative PPT
                              taatagtaagtttttt  TA-rich tract