Sequence
atgc intronic sequence ATGC exonic sequencegtactgacctatgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g00080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S70_58V6.1 (Physcomitrella patens), 3'ss of exon 12
-----------------------------------------------------------------------------------------------------gtactgaccta--tgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaa----cagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCA-----------------------------------------------------------------
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gtaagtttatacgaagttgaatttcgtcagtcgtaggtgcagagcttacataactttctaattgcatcaacaaatggacacaagcttcggtggacttctttctactagttgaagtatcactctggttgttattttctcagtctctgtctgaattgttggatatc-tcatctactgaatggtttgtcttgatgatttgcagCCTGCACATGATAAAATTGGAGTTGTAGATGCTCAGTGGATCCGACATCGGGTTGTGCTATCTCTAAATAGCTCGGTTTGTGTTCCTCACAACCATTCAC
upper sequence: Vv05s0077g00080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S70_58V6.2 (Physcomitrella patens), 3'ss of exon 12
-----------------------------------------------------------------------------------------------------gtactgaccta--tgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaa----cagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCA----------------------------------------
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gtaagtttatacgaagttgaatttcgtcagtcgtaggtgcagagcttacataactttctaattgcatcaacaaatggacacaagcttcggtggacttctttctactagttgaagtatcactctggttgttattttctcagtctctgtctgaattgttggatatc-tcatctactgaatggtttgtcttgatgatttgcagCCTGCACATGATAAAATTGGAGTTGTAGATGCTCAGTGGATCCGACATCGGGTTGTGCTATCTCTAAATAGCTCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCA
cttcctcgtcttt CT-rich tract
atcatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactgacctatgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG