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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttactagcactagtggcgttctttcatttttaaagggcataatctttccacccatggaatatgttgtgtttttaatatgagcccatatcggttgtttacttcgctgatgttttaatggattggtatggccttcctttttttatggtcttgcttcacaaaatggcctttcactttgcagATTATTGGTGAAATATCTGTTTCTGGCGCGACATATAAATCTATGGAATTTGTTGGCACTACTGTTGAAAGTTTAACT

Basic information

species Vitis vinifera
transcript Vv05s0049g01980.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0049g01980.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os02g03260.1 (Oryza sativa), 3'ss of exon 6
gtaagtcttactagcactagtggcgttctttcatttttaaagggcataatctttccacccatggaatatgttgtgtttttaatatgagcccatatcggttgtttacttcgctgatgttttaatggattggtatggccttcctttttttatggtcttgcttcacaaaatggcctttcactttgcagATTATTGGTGAAATATCTGTTTCTGGCGCGACATATAAATCTATGGAATTTGTTGGCACTACTGTTGAAAGTTTAACT
                                                                                  || ||   || |    |||| || ||  ||| |  ||      ||   | |  ||  | |||| | || |     | |||  || ||      |   ||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| ||||||||  | ||||| |||||| ||| |
---------------------------------------------------------------------------------gtaagactacaaaatacttgtatatttttctg-tactt------atctttcta-ccagcattttctaatagctcatcctcaataattg------ctaattgcagATTATTGGTGAGATTTCTGTATCTGGCGCAACATACAAATCCATGGAGTTTGTTGGATCAACTGTGGAAAGTCTAAAT

upper sequence: Vv05s0049g01980.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G40570.1 (Glycine max), 3'ss of exon 7
gtaagtcttactagcactagtggcgttctttcatttttaaagggcataatctttccacccatggaatatgttgtgtttttaatatgagcccatatcggttgtttacttcgctgatgttttaatggattggtatggccttcctttttttatggtcttgcttcacaaaatggcctttcactttgcagATTATTGGTGAAATATCTGTTTCTGGCGCGACATATAAATCTATGGAATTTGTTGGCACTACTGTTGAAAGTTTAACT
                   ||   |||| || ||| | ||           |||    |  | | | || |  |     | |  ||| |    || | ||| | | ||   ||       |    ||    |              |||    ||| | | |   |||||   || || || |||||||||||||||||| ||||  |||| || ||||||||||| ||||| |||||||| || || |||||||||||||||
-------------------gtaa-gttccttgattctgaa---------cttttgtttctgttggacatatcataggcattaggtgaccgtg-attgcttgctcattttcatg------cagcaaatataaaaa------------ttacatccttacatgaatgaatgg---tttaccttacagATTATTGGTGAAATAACTGTGGCTGGGGCAACATATAAATCGATGGAGTTTGTTGGTACAACCGTTGAAAGTTTAACT

upper sequence: Vv05s0049g01980.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G37540.1 (Glycine max), 3'ss of exon 7
gtaagtcttactagcactagtggcgttctttcatttttaaagggcataatctttccacccatggaatatgttgtgtttttaatatgagcccatatcggttgtttacttcgctgatgttttaatg-gattggtatggccttcctttttttatggtcttgcttcacaaaatggcctttcactttgcagATTATTGGTGAAATATCTGTTTCTGGCGCGACATATAAATCTATGGAATTTGTTGGCACTACTGTTGAAAGTTTAACT
                  |||   || | || ||| |  |           |||    |  | | | ||    |     | |  |||  | ||   | |||||| ||         |||| |||       |||     |        ||    ||| | | |    ||||   || || || |||||||||||||||||| ||||  |||| || ||||||||||| ||||| ||||| || || ||||||||||||||||| 
------------------agtaa-gtgccttgattctgta---------cttttgtttctgttggacatagcatagccatcaggtga--ctat---gattgtttgctc-------attttcatgcagcaaatataaaaat--------tacatccttacatgaatggatgg---tttaccttacaGATTATTGGTGAAATAACTGTGGCTGGTGCAACATATAAATCGATGGAGTTTGTCGGTACAACTGTTGAAAGTTTAAC-

upper sequence: Vv05s0049g01980.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G13430.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtcttactagcactagtggcgttctttcatttttaaagggcataatctttccacccatggaatatgttgtgtttttaatatgagcccatatcggttgtttacttcgctgatgttttaatggattggtatggccttcctttttttatggtcttgcttcacaaaatggcctttcactttgcagATTATTGGTGAAATATCTGTTTCTGGCGCGACATATAAATCTATGGAATTTGTTGGCACTACTGTTGAAAGTTTAACT
                                                                                   | |   | | || | | ||||||||   |  || || | |   |||| ||   ||  ||    |  |     ||  |    || | || |   |||||| ||||||||||||||||||||||| |||| || || || ||  | ||||| ||   ||| || ||| | |||||| | | |
---------------------------------------------------------------------------------gca-gtctctaaattgatagtttacttatatagtgatt-actcttttgggat--tctatctggcgtccttcatctggatattgaacttgcttcaaactttgtagATTATTGGTGAAATATCTGTTGCTGGTGCAACTTACAAGACGATGGAGTTCAGTGGTACAACTATCGAAAGTCTGAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156738921|gb|EV243042.1|EV243042
EST:     TGGATGGAGAAATGCCCAATTATTTGCTCGCAAAAGATTTGATTTTGCAA                         ATTATTGGTGAAATATCTGTTTCTGGCGCGACATATAAATCTATGGAATTT
genomic: TGGATGGAGAAATGCCCAATTATTTGCTCGCAAAAGATTTGATTTTGCAAgtaagtctta ... cactttgcagATTATTGGTGAAATATCTGTTTCTGGCGCGACATATAAATCTATGGAATTT
EST: gi|71857614|gb|DT006669.1|DT006669
EST:     TGGATGGAGAAATGCCCAATTAGGTGCTCGCAAAAGATTTGATTTTGCAA                         ATTATTGGTGAAATATCTGTTTCTGGCGCGACATATAAATCTATGGAATTT
genomic: TGGATGGAGAAATGCCCAATTATTTGCTCGCAAAAGATTTGATTTTGCAAgtaagtctta ... cactttgcagATTATTGGTGAAATATCTGTTTCTGGCGCGACATATAAATCTATGGAATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggccttcctttttttatggtcttgcttcacaaaatggcctttcactttgcagATTATTGGTGAAATATCTGTTTCTGGCGCGACATATAAATCTATGGAATTTGTTGGCACTACTGTTGAAAGTTTAACT
                                        cctttcacttt  CT-rich tract
           tttttttat  TA-rich tract