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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtttgccatgatgtacaattactcatatttggtttaatctcagattttaattaagatttagaaaggctattttttaaatattgattttcacattctcttttcagATACCTACATCATTGGCTCCTATTGATGCTGTGGAGAGGTATACTCAGCTCTCTAGCTATCCTCTCCACAAAACTAACAAACCAGGCATTTTATCTGCTG

Basic information

species Vitis vinifera
transcript Vv05s0049g01840.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110729437|gb|EE105388.1|EE105388
EST:     AACTTACAGACTGTAATGCGGCACTTTCACAGCAGCGGAAGAAGCGACAG                         ATACCTACATCATTGGCTCCTATTGATGCTGTGGAGAGGTATACTCAGCTC
genomic: AACTTACAGACTGTAATGCGGCACTTTCACAGCAGCGGAAGAAGCGACAGgtattgtttg ... ctcttttcagATACCTACATCATTGGCTCCTATTGATGCTGTGGAGAGGTATACTCAGCTC
EST: gi|110687481|gb|EE064937.1|EE064937
EST:     AACTTACAGACTGTAATGCGGCACTTTCACAGCAGCGGAAGAAGCGGCAG                         ATTCCTACATCATTGGCTCCTATTGATGCTGTGGAGAGGTATACTCAGCTC
genomic: AACTTACAGACTGTAATGCGGCACTTTCACAGCAGCGGAAGAAGCGACAGgtattgtttg ... ctcttttcagATACCTACATCATTGGCTCCTATTGATGCTGTGGAGAGGTATACTCAGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaagatttagaaaggctattttttaaatattgattttcacattctcttttcagATACCTACATCATTGGCTCCTATTGATGCTGTGGAGAGGTATACTCAGCTCTCTAGCTATCCTCTCCACAAAACTAACAAACCAGGCATTTTATCTGCTG
                             tattgat  putative branch site (score: 3)
                                   ttttcacattctcttt  CT-rich tract
                  tattttttaaatattg  TA-rich tract