1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaatgtttcctgttggttatttgttaacagtttctttttgttctgatactgttggtatctttgtgatgagtttctcaaactgcatcttcccatattgcagGATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGGAGGCTTGTAGCTACAGAGTTTCTAAAGCAATTCATCTGAAGCTTGTTTC
species | Vitis vinifera |
transcript | Vv05s0029g01310.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGATATGCAAAAACACAAGCTTATTGATTTTATCGTGCAATTTATGGAG GATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGGEST: gi|351046852|gb|FQ454462.1|FQ454462
genomic: AGGATATGCAAAAACACAAGCTTATTGATTTTATCGTGCAATTTATGGAGgcaagttctc ... catattgcagGATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGG
EST: AGGATATGCAAAAACACAAGCTTATTGATTTTATCGTGCAATTTATGGAA GATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGGEST: gi|71857830|gb|DT006885.1|DT006885
genomic: AGGATATGCAAAAACACAAGCTTATTGATTTTATCGTGCAATTTATGGAGgcaagttctc ... catattgcagGATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGG
EST: AGGATATGCAAAAACACAAGCTTATTGATTTTATCGTGCAATTTATGGAG GATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACEST: gi|110693326|gb|EE069458.1|EE069458
genomic: AGGATATGCAAAAACACAAGCTTATTGATTTTATCGTGCAATTTATGGAGgcaagttctc ... catattgcagGATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACAC
EST: AGGATATGCAAAAACACAAGCTTATTGATTTTATCGTGCAATTTATGGAG GATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGGEST: gi|349826081|gb|FQ415886.1|FQ415886
genomic: AGGATATGCAAAAACACAAGCTTATTGATTTTATCGTGCAATTTATGGAGgcaagttctc ... catattgcagGATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGG
EST: AGGATATGCAAAAACACAAGCTTATTGATTTTATCGTGCAATTTATGGAG GATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGGEST: gi|33405119|gb|CF210746.1|CF210746
genomic: AGGATATGCAAAAACACAAGCTTATTGATTTTATCGTGCAATTTATGGAGgcaagttctc ... catattgcagGATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGG
EST: AGGATATGCAAAAACACAAGCTTATTGATTTTATCGTGCAATTTATGGAG GATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGG
genomic: AGGATATGCAAAAACACAAGCTTATTGATTTTATCGTGCAATTTATGGAGgcaagttctc ... catattgcagGATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGG
atactgttggtatctttgtgatgagtttctcaaactgcatcttcccatattgcagGATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGGAGGCTTGTAGCTACAGAGTTTCTAAAGCAATTCATCTGAAGCTTGTTTC
ttctgat putative branch site (score: 3)
catcttccc putative PPT
tatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatgtttcctgttggttatttgttaacagtttctttttgttctgatactgttggtatctttgtgatgagtttctcaaactgcatcttcccatattgcagGATATCGATAAAGAGATAAGCGAATTGAAATTGTCGGTGAACACACGTGGGAGGCTTGTAGCTACAGAGTTTCTAAAGCAATTCATCTGAAGCTTGTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - cctgttg
- - - - -ctgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcaaac