Sequence
atgc intronic sequence ATGC exonic sequence...tagctgtcaaaatttgaagccttgtggaagcaattttataatttagttattttattgtgctgaacaagatcttttactgttatatgtatgattggagcagAAATGATGCAGGATTGGCAGCTGCAGAGTTAGCACTAGCTGTTGAGAAACATGTGTTAGAATCTGGATCTATTGATACTGTTGGTACTGTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04900.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os12g40550.1 (Oryza sativa), 3'ss of exon 7
tagctgtcaaaatttgaagccttgtggaagcaattttataatttagttatttt-attgtgctgaacaagatcttttactgttatatgtatgattggagcagAAATGATGCAGGATTGGCAGCTGCAGAGTTAGCACTAGCTGTTGAGAAACATGTGTTAGAATCTGGATCTATTGATACTGTTGGTACTGTGG
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-----gttagcatttccattcattcttcatccatgtggt--ttacattattttgaaaggtccccaccacatatttacatgg-gtaaagaaactttttacagAAATGATGCTGGACTGGCGGCAGCTGAGTTGGCATTAGCAGTTGAGAAACACGTTTTGGAATCAGGATCAATTGATACTGTTGGGACAGTTG
upper sequence: Vv05s0020g04900.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G130034_T01 (Zea mays), 3'ss of exon 7
tagctgtcaaaatttgaagccttgtggaagcaattttataatttagttat--tttattgtgctgaacaagatcttttactgttatatgtatgattggag-------cagAAATGATGCAGGATTGGCAGCTGCAGAGTTAGCACTAGCTGTTGAGAAACATGTGTTAGAATCTGGATCTATTGATACTGTTGGTACTGTGG
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-----------------------gttagcatattctttcatttttattgcgatttacatttgtgtgaaggatctcc-acaaatatttatgtagaaggagtgttctacagAAATGATGCTGGACTGGCAGCAGCTGAATTAGCATTAGCAGTCGAGAAACATGTCCTGGAATCAGGATCAATTGATACGGTTGGCACCGTTG
upper sequence: Vv05s0020g04900.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G34790.1 (Glycine max), 3'ss of exon 7
tagctgtcaaaatttgaagccttgtggaagcaattttataatttagttattttattgtgctgaacaagatctttta---ctgttatatgtat-gattggagcagAAATGATGCAGGATTGGCAGCTGCAGAGTTAGCACTAGCTGTTGAGAAACATGTGTTAGAATCTGGATCTATTGATACTGTTGGTACTGTGG
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tatattttttagtccactactttg----atcccttttgcaattgaaacttcttaattaacaaactctgatgatttaagtatactttatatatcaattggagcagAAATGATGCTGGTCTGGCTGCTTCTGAATTAGCCCTGGCTGTAGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTTG
upper sequence: Vv05s0020g04900.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G32850.2 (Glycine max), 3'ss of exon 6
tagctgtcaaaatttgaagccttgtggaagcaattttataatttagttattttattgtgctgaacaagatctttta---ctgttatatgtatgatt-ggagcagAAATGATGCAGGATTGGCAGCTGCAGAGTTAGCACTAGCTGTTGAGAAACATGTGTTAGAATCTGGATCTATTGATACTGTTGGTACTGTGG
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tatattttctagtccactactttg----atcccttttgaaattgaaacttcttaattaacaaactctaatgatttaagtatactttatatatcatttggagcagAAATGATGCTGGTCTGGCTGCTTCTGAATTAGCCCTGGCTGTAGAGAGGCATGTGTTGGATTCTGGTTCAATTGATACTGTTGGCACTGTCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110377763|gb|EC942850.1|EC942850EST: ATGCGGGTGCTGTCTTGATGCCAAATAG AAATGATGCAGGATTGGCAGCTGCAGAGTTAGCACTAGCTGTTGAGAAACA
genomic: ATGCGGGTGCTGTCTTGATGCCAAATAGgtgatgattt ... attggagcagAAATGATGCAGGATTGGCAGCTGCAGAGTTAGCACTAGCTGTTGAGAAACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttattttattgtgctgaacaagatcttttactgttatatgtatgattggagcagAAATGATGCAGGATTGGCAGCTGCAGAGTTAGCACTAGCTGTTGAGAAACATGTGTTAGAATCTGGATCTATTGATACTGTTGGTACTGTGG
ttttactgttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagctgtcaaaatttgaagccttgtggaagcaattttataatttagttattttattgtgctgaacaagatcttttactgttatatgtatgattggagcagAAATGATGCAGGATTGGCAGCTGCAGAGTTAGCACTAGCTGTTGAGAAACATGTGTTAGAATCTGGATCTATTGATACTGTTGGTACTGTGG
- - - tcaaaat
- - - - - - - - - -ccttgtg
- - - - - - - - - - - - - gaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaga