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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagagtgttagctgataatttttcttttcttactgattgatttggttacaggttctctctgtaattctcatctggaatttacatgcttgtggtttgccagGCCTGCAAAATTGTAGAGGGGCAGCGGTATACCAAAAGGTTGAATGAGAGGCAAATTACTGCTCTATTAAAAGTTACATGCCAAAGACCCAGGGATCAGG

Basic information

species Vitis vinifera
transcript Vv05s0020g04190.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G28970.1 (Glycine max), 3'ss of exon 8
gtacagagtgttagctgataatttttcttttcttactgattgatttggttacaggttctctctgtaattctcatctggaat-ttacatgcttgtggtttgccagGCCTGCAAAATTGTAGAGGGGCAGCGGTATACCAAAAGGTTGAATGAGAGGCAAATTACTGCTCTATTAAAAGTTACATGCCAAAGACCCAGGGATCAGG
             |  |  ||  ||      |||    ||||   | || ||      | |   ||||  |  | || ||| |    ||||| |||||  |||||||||||||||||| |||||||| || ||||| ||||| |||||||||| ||||||||| |||||||| |||||||| ||||| || ||  | |||| ||
-------------gtagggaaagtt------cttggcaattggagtagtcactcaacattttcataatgattttgtgtaatgtcgtttgcttttggttccccagGCCTGCAAAATTGTTGAGGGGCAACGTTATACAAAAAGATTGAATGAGAAGCAAATTACGGCTCTATTGAAAGTTACTTGCCAGAGGCCTCGCGATCGGG

upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G38770.1 (Glycine max), 3'ss of exon 8
gtacagagtgttagctgataatttttcttttcttactgattgatttggttacaggttctctctgtaattctcatctggaat-ttacatgcttgtggtttgccagGCCTGCAAAATTGTAGAGGGGCAGCGGTATACCAAAAGGTTGAATGAGAGGCAAATTACTGCTCTATTAAAAGTTACATGCCAAAGACCCAGGGATCAGG
                  |||     |  |||||    |||||  | || ||      | |   ||||  |  | |  ||| | |  ||| | ||| |  |||||||||||||||||| |||||||| || ||||| ||||| |||||||||| ||||||||| ||||| || |||||||| ||||| |||||  | |||| ||
-----------------gtaagga--cagttcttggcaattgaagtagtcactcaacattttcataatgattttgtctaatgtcatttgcctttggctccccagGCCTGCAAAATTGTTGAGGGGCAACGTTATACAAAAAGATTGAATGAGAAGCAAATTACAGCTCTGTTGAAAGTTACTTGCCAGAGACCTCGCGATCGGG

upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G00510.1 (Glycine max), 3'ss of exon 7
gtacagagtgttagctgataatttttcttttcttactgattgatttggttacaggttctctctgtaattctcatctggaatttacatgcttgtggtttgccagGCCTGCAAAATTGTAGAGGGGCAGCGGTATACCAAAAGGTTGAATGAGAGGCAAATTACTGCTCTATTAAAAGTTACATGCCAAAGACCCAGGGATCAGG
           |||  || |         ||| |  | |||||  | | | |   |  |   ||||||| |    |     |||||||||| |||||   ||||||||||||||||| ||||| || || ||||| |||||||||||||||| |||||| ||||||||  | |||||||| || ||||||||  | ||||  |
----------gtaggggaaa---------ttcctggtaattgacataggtgcttttctttcttgtaattatttgatttttcttacatgcttctggttcctcagGCCTGCAAAATTGTTGAGGGACAACGATATACAAAAAGGTTGAATGAGAAGCAAATCACTGCTCTCCTGAAAGTTACTTGTCAAAGACCTCGTGATCGAG

upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G43810.1 (Arabidopsis thaliana), 3'ss of exon 7
gtacagagtgttagctgataatttttcttttcttactgattgatttggttacaggttctctctgtaattctcatctggaatttacatgcttgtggtttgccagGCCTGCAAAATTGTAGAGGGGCAGCGGTATACCAAAAGGTTGAATGAGAGGCAAATTACTGCTCTATTAAAAGTTACATGCCAAAGACCCAGGGATCAGG
    | |  || | ||| |  ||| | | ||   |  || |  |    || |||   ||||  |  ||| ||       ||| |  | |   ||       |||| ||||||||||| ||||| || ||||| || |||||||||||||||| ||| ||||||||||| || ||||||||||||||||| || |||||    |
--gtaaaccgtaaactgctggtttgtttgtttcaa--gact--tcacatttcag---ctcttggctattttcgct---gattcaatttccaatg------tagGCATGCAAAATTGTCGAGGGACAACGGTACACGAAAAGGTTGAATGAGAAGCAGATTACTGCTCTCTTGAAAGTTACATGCCAAAGGCCGAGGGACAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacaggttctctctgtaattctcatctggaatttacatgcttgtggtttgccagGCCTGCAAAATTGTAGAGGGGCAGCGGTATACCAAAAGGTTGAATGAGAGGCAAATTACTGCTCTATTAAAAGTTACATGCCAAAGACCCAGGGATCAGG
                              aatttacat  TA-rich tract