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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttatgagattaaaattctggatggtggcaaagcaagaattttggctccagtttagaatgggtacctcaatacttctgattatggttgcagGTTGAACACCCATGCAGTAATAGAACCATTTGTGATTGCAACAAACAGACAATTGAGTGTGCTTCACCCCATATATAAGCTTCTGCATCCTCACTTCCGT

Basic information

species Vitis vinifera
transcript Vv05s0020g03170.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352789730|gb|FQ478545.1|FQ478545
EST:     GCTTATGCTGCAGTGAATGATTCTGGCTACCATCAACTCATTAGTCACTG                         GTTGAACACCCATGCAGTAATAGAACCATTTGTGATTGCAACAAACAGACA
genomic: GCTTATGCTGCAGTGAATGATTCTGGCTACCATCAACTCATTAGTCACTGgtatgtttat ... atggttgcagGTTGAACACCCATGCAGTAATAGAACCATTTGTGATTGCAACAAACAGACA
EST: gi|351039852|gb|FQ464890.1|FQ464890
EST:     GCTTATGCTGCAGTGAATGATTCTGGCTACCATCAACTCATTAGTCACTG                         GTTGAACACCCATGCAGTAATAGAACCATTTGTGATTGCAACAAACAGACA
genomic: GCTTATGCTGCAGTGAATGATTCTGGCTACCATCAACTCATTAGTCACTGgtatgtttat ... atggttgcagGTTGAACACCCATGCAGTAATAGAACCATTTGTGATTGCAACAAACAGACA
EST: gi|351040603|gb|FQ438147.1|FQ438147
EST:     GCTTATGCTGCAGTGAATGATTCTGGCTACCATCAACTCATTAGTCACTG                         GTTGAACACCCATGCAGTAATAGAACCATTTGTGATTGCAACAAACAGACA
genomic: GCTTATGCTGCAGTGAATGATTCTGGCTACCATCAACTCATTAGTCACTGgtatgtttat ... atggttgcagGTTGAACACCCATGCAGTAATAGAACCATTTGTGATTGCAACAAACAGACA
EST: gi|349831061|gb|FQ420731.1|FQ420731
EST:     GCTTATGCTGCAGTGAATGATTCTGGCTACCATCAACTCATTAGTCACTG                         GTTGAACACCCATGCAGTAATAGAACCATTTGTGATTGCAACAAACAGACA
genomic: GCTTATGCTGCAGTGAATGATTCTGGCTACCATCAACTCATTAGTCACTGgtatgtttat ... atggttgcagGTTGAACACCCATGCAGTAATAGAACCATTTGTGATTGCAACAAACAGACA
EST: gi|161713028|gb|FC062450.1|FC062450
EST:     GCTTATGCTGCAGTGAATGATTCTGGTTACCATCAACTCATTAGTCACTG                         GTTGAACACCCATGCAGTAATAGAACCATTTGTGATTGCAACAAACAGACA
genomic: GCTTATGCTGCAGTGAATGATTCTGGCTACCATCAACTCATTAGTCACTGgtatgtttat ... atggttgcagGTTGAACACCCATGCAGTAATAGAACCATTTGTGATTGCAACAAACAGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattttggctccagtttagaatgggtacctcaatacttctgattatggttgcagGTTGAACACCCATGCAGTAATAGAACCATTTGTGATTGCAACAAACAGACAATTGAGTGTGCTTCACCCCATATATAAGCTTCTGCATCCTCACTTCCGT
                                     ttctgat  putative branch site (score: 3)
               tttagaat  TA-rich tract