Sequence
atgc intronic sequence ATGC exonic sequencegtacacactcagctttgtttgaaataaaacatctctctctctctctctctctctctctctctgtatatatatatatatatatatatatatatcctctgcatgtgttttgaataacttacaggttgtcttcctgatccagCATTGCAGCTGTTCTTTATGATGGGCGTCTAGATGAGCGGAAGGCATTGAGGGAAGAGATATCAGGAGAAGGGAAATTCAATGTGCTGATCACCCACTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G39630.1 (Glycine max), 3'ss of exon 5
gtacacactcagctttgtttgaaataaaacatctctctctctctctctctctctctctctctgt---------atatatatatatatatatat-atatatatcctctgcatgtgt----tttgaataacttacaggttgtcttcctgatccagCATTGCAGCTGTTCTTTATGATGGGCGTCTAGATGAGCGGAAGGCATTGAGGGAAGAGATATCAGGAGAAGGGAAATTCAATGTGCTGATCACCCACTAT
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----gtatgtcactatgcccaaagcagacattttaaattgtttcgtctccttcttcccttgtggggagaggggatataattctttttgtgaattatgcacatcatattcacttttaattttcaaatcacacatgccttttctttctgattcagCATCACAGCTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTTAATGTTCTATTAACGCACTAT
upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G28120.1 (Glycine max), 3'ss of exon 8
gtacacactcagctttgtttgaaataaaacatctctctctctctctctctctctctctctctgtatatatatatatatata---tatatatatatcctctgcatgtgttttgaataacttacaggttgtcttcctgatccagCATTGCAGCTGTTCTTTATGATGGGCGTCTAGATGAGCGGAAGGCATTGAGGGAAGAGATATCAGGAGAAGGGAAATTCAATGTGCTGATCACCCACTAT
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gtatgcccaaagcagacattg---taaattattttgtctccttcttcctttgtggggagaggggatataattctgtttgtgaactctgcacatcatatttgcttttaattttca-aacatattccttttctttctgattcagCATCACTGCTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTTAATGTTCTATTAACGCACTAT
upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G06010.1 (Arabidopsis thaliana), 3'ss of exon 7
gtacacactcagctttgtttgaaataaaacatctctctctctctctctctctctctctctctgtatatatatatatatatatatatatatatcctctgcatgtgttttgaataacttacaggttgtcttcctgatccagCATTGCAGCTGTTCTTTATGATGGGCGTCTAGATGAGCGGAAGGCATTGAGGGAAGAGATATCAGGAGAAGGGAAATTCAATGTGCTGATCACCCACTAT
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------------------------------------gtatgttgcaaacaatatttctcttggtactgagaaat---tgcactggtatgaatgttatg-------tctgaaaatcagcctttttgtttttttga--cagCATTGCAGCTTTTCTGTATGATGGACGTTTAGAGGAAAGGAAAGCAATAAGGGAAAAAATTGCAGGAGAAGGAAAATTTAATGTGTTGATAACCCATTAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatatatcctctgcatgtgttttgaataacttacaggttgtcttcctgatccagCATTGCAGCTGTTCTTTATGATGGGCGTCTAGATGAGCGGAAGGCATTGAGGGAAGAGATATCAGGAGAAGGGAAATTCAATGTGCTGATCACCCACTAT
ttgtcttcct CT-rich tract
ttttgaataactta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacacactcagctttgtttgaaataaaacatctctctctctctctctctctctctctctctgtatatatatatatatatatatatatatatcctctgcatgtgttttgaataacttacaggttgtcttcctgatccagCATTGCAGCTGTTCTTTATGATGGGCGTCTAGATGAGCGGAAGGCATTGAGGGAAGAGATATCAGGAGAAGGGAAATTCAATGTGCTGATCACCCACTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT