Sequence
atgc intronic sequence ATGC exonic sequence...cactgttttctttcctgaagccaggtatatcagatgctcttttttgtaaatttactcaacagtaaagcaactgaatttaagctcatcaatttgatggaagTTTAGCAGAGCTCGAGAAAGTATTTGAGATTGCAGTCAGAGGATCAGATGATGAGAAGATATCTGCTGCTACTATCCTTTGTGGAGCCTCTTTGATTCGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G10970.1 (Glycine max), 3'ss of exon 8
cactgttttctttcctgaagccaggtatatcagatgctcttttttgtaaatttactcaacagtaaagcaactgaatttaagctcatcaatttgatggaagTTTAGCAGAGCTCGAGAAAGTATTTGAGATTGCAGTCAGAGGATCAGATGATGAGAAGATATCTGCTGCTACTATCCTTTGTGGAGCCTCTTTGATTCGG
||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| |||| | |||||||||||| |||||||| || |||||| | ||||| |||||| | | |||||||| ||||| ||||||||||||||| | || ||||| || || || | |||||
tttctttttctttcctgaagccaggtatgtcagatgctcttttttgtaaatttaccaaaaggtaaagcaactgaatttacgctcctggatttgatggaagCTTAGCAGAACTGGAGAAAATTTTTGAAATTGCAATTGGGGGATCAGAAGATGAAAAGATATCTGCTGCTGCCATTCTTTGCGGGGCATCCCTAATTCGT
upper sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G28070.1 (Glycine max), 3'ss of exon 8
cactgttttctttcctgaagccaggtatatcagatgctcttttttgtaaatttactcaacagtaaagcaactgaatttaagctcatcaatttgatggaagTTTAGCAGAGCTCGAGAAAGTATTTGAGATTGCAGTCAGAGGATCAGATGATGAGAAGATATCTGCTGCTACTATCCTTTGTGGAGCCTCTTTGATTCGG
||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| |||| | |||||||||||| |||||||| || ||||| | ||||| |||||| | |||||||| ||||| ||||||||||||||| | || ||||| || || || | ||| |
tttctttttctttcctgaagccaggtatgtcagatgctcttttttgtaaatttaccaaaaggtaaagcaactgaatttacgctcctggatttgatggaagCTTAGCAGAACTGGAGAAGATTTTTGAAATTGCAATTGAGGGATCAGAAGATGAAAAGATATCTGCTGCTGCCATTCTTTGCGGGGCATCCCTAATTTGT
upper sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G23590.1 (Arabidopsis thaliana), 3'ss of exon 7
-----------cactgttttctttcctgaagccaggtatatcagatgctcttttttgtaaatttactcaacagtaaagcaactgaatttaagctcatcaatttgatggaagTTTAGCAGAGCTCGAGAAAGTATTTGAGATTGCAGTCAGAGGATCAGATGATGAGAAGATATCTGCTGCTACTATCCTTTGTGGAGCCTCTTTGATTCGG
| | ||| | | ||||||||| |||||||||||| ||||||| | | ||||||||||||||| | | ||||| |||||||||||| |||||||||||||||||| |||||||| ||||||||| |||||| ||||| |||||||||||||||||||| | ||||| || || ||| | | |||
tcttcttcagttattcctttttgtttcttagccaggta------atgctcttttttt--aatttac-cgagagtaaagcaactgaaat--acctcatggatttgatggaagCTTAGCAGAGCTCGAGAAACTATTTGAGGTTGCAGTCAAAGGATCGGATGACGAGAAGATATCTGCTGCTACAGTTCTTTGCGGGGCATCTCTCACACGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaaatttactcaacagtaaagcaactgaatttaagctcatcaatttgatggaagTTTAGCAGAGCTCGAGAAAGTATTTGAGATTGCAGTCAGAGGATCAGATGATGAGAAGATATCTGCTGCTACTATCCTTTGTGGAGCCTCTTTGATTCGG
atttgat putative branch site (score: 5)
tgaatttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cactgttttctttcctgaagccaggtatatcagatgctcttttttgtaaatttactcaacagtaaagcaactgaatttaagctcatcaatttgatggaagTTTAGCAGAGCTCGAGAAAGTATTTGAGATTGCAGTCAGAGGATCAGATGATGAGAAGATATCTGCTGCTACTATCCTTTGTGGAGCCTCTTTGATTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - tctttcc
- - - - - - - - gaagcca
- - - - - - - - - - - - - - - cagatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcatca