1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatatttccattttgttggtttgagattttttagccagattgttttggtagatttattcacttaaactgttttgtttttcttttctcaagGTTGCCCTTGGGTATGAGAGGAAATACAACGTGGAAAATCCATTTGATTGGATGGAGTTTATTTCTTTGCA
species | Vitis vinifera |
transcript | Vv05s0020g02560.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACGCAACACTCATGAGCCAGTACATAAAATTTGTCGCTGACCGCCTTTTG GTTGCCCTTGGGTATGAGAGGAAATACAACGTGGAAAATCCATTTGATTGGEST: gi|71890015|gb|DT039070.1|DT039070
genomic: ACGCAACACTCATGAGCCAGTACATAAAATTTGTCGCTGACCGCCTTTTGgtatatttcc ... ttttctcaagGTTGCCCTTGGGTATGAGAGGAAATACAACGTGGAAAATCCATTTGATTGG
EST: ACGCAACACTCATGAGCCAGTACATAAAATTTGTCGCTGACCGCCTTTTG GTTGCCCTTGGGTATGAGAGGAAATACAACGTGGAAAATCCATTTGATTGG
genomic: ACGCAACACTCATGAGCCAGTACATAAAATTTGTCGCTGACCGCCTTTTGgtatatttcc ... ttttctcaagGTTGCCCTTGGGTATGAGAGGAAATACAACGTGGAAAATCCATTTGATTGG
cagattgttttggtagatttattcacttaaactgttttgtttttcttttctcaagGTTGCCCTTGGGTATGAGAGGAAATACAACGTGGAAAATCCATTTGATTGGATGGAGTTTATTTCTTTGCA
ctgttttgtttttctt CT-rich tract
atttattcacttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatttccattttgttggtttgagattttttagccagattgttttggtagatttattcacttaaactgttttgtttttcttttctcaagGTTGCCCTTGGGTATGAGAGGAAATACAACGTGGAAAATCCATTTGATTGGATGGAGTTTATTTCTTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA