Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcttactcactgttatttgagtattgagaaatctaccaaatttacagataaatattattatattagctgcttcatatatgtctgcaccttgtaaatttccttgcagGCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAG

Basic information

species Vitis vinifera
transcript Vv05s0020g01880.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G09370.1 (Glycine max), 3'ss of exon 6
------------------------------gttttcttactcactgttatttga-gtattgagaaatctaccaaat--ttacagataaatat-tat-tatattagctgctt-----------catatatgtctgcaccttgtaaatttccttgcagGCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAG
                                  |  |  | | | ||    ||  | |  |  | |||| || ||  ||     || |||| ||| ||||||  ||  ||           ||        | |||   |    | |  || |||||| ||| | |||||  ||||||||||||| ||||||||||||||||| ||||| |  ||||| |
gttgggtgctttctctttaacttgtcaagtaacattctgattattcttgcaggatatttctaccagtctatcagattgttgtgattatatatatatatatattcactttttggttaaaagaacaatctcacatccacaccgctgctgtgttttcagGCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTG

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G26450.1 (Glycine max), 3'ss of exon 6
-----------------------------gttttcttactcactgttatttga-gtattgagaaatctaccaaatt--tacagataaatattattatattagctgctt--------catatatgtctgcaccttgtaaatttccttgcagGCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAG
                              | |||||  | | | ||    || || |     | || | || | |   |    |   | || ||  | |   || ||        |||         |||  ||   || |  || |||||| ||| | |||||  ||||||||||||| ||||||||||||||||| |||||    ||||| |
gttggctgctttctctttaacttgtcaaattattcttgattattcttgcaggatgtttctgccagtcaatcagactgtcatgatttttttttctttcactttttggttaaaagaaacattctcacactcacactgctgatgtgttttcagGCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTG

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G28660.1 (Glycine max), 3'ss of exon 7
--------------------------------------------------gttttcttactcactgttatttgagtattgagaaatctaccaaatttacagataaatattattatattagc---tgcttcata-tatgtctgcaccttgtaaatttccttgcagGCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAG
                                                  | |||||| ||  |||  |||||    ||  | | |||  ||| |   | |    |  |  | ||   | |   || ||| |  ||| ||||  | || ||||| |  |  |||||| ||| | ||||| |||||| | ||||| |||||||| |||||||||||||||   |||||||
gttacatgctatatatcccttgagtttgcaactattacaatggagacagagatttctt-ctttctgagatttg----ttccgcactcttgcaattgccctgtgttagttagtgatgccaacatatgtttcctgctatttctgacctttctaaatgttgt--cagGCAAGAAGTGATGGATTTGGTTTACAAAAGTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34415661|gb|CF414415.1|CF414415
EST:     AAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAG                         GCAGGAATTAATGGACTTGGTTAATAAAAGTGGGAAATTCGGTAAAAAGTN
genomic: AAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAGgttttcttac ... ttccttgcagGCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTT
EST: gi|34320535|gb|CF373289.1|CF373289
EST:     AAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAG                         GCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTT
genomic: AAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAGgttttcttac ... ttccttgcagGCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattattatattagctgcttcatatatgtctgcaccttgtaaatttccttgcagGCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAG
                                            tttccttgc  CT-rich tract
     attatatta  TA-rich tract