Sequence
atgc intronic sequence ATGC exonic sequencegttgattttatatgttttgcatgtgtgtaattgcttctctttccccattttgtttctcagttgatgtgaaataaacctaactctctttttttgcttttgtagTGTGGGCATTTGACATAGAAACAGAGTGTTGGTCACTAATGGAAGCAAAGGGAGACATACCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G28760.1 (Glycine max), 3'ss of exon 5
gttgattttatatgttttgcatgtgtgtaattgcttctctttccccattttgtttctcagttgatgtgaaataaacctaactctctttttttgcttttgtagTGTGGGCATTTGACATAGAAACAGAGTGTTGGTCACTAATGGAAGCAAAGGGAGACATACCG
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gttcaccct-catcttcttcacatatgtaatagctt---tgtccttgttca----------tgctgcaaaattgttctaattgtctttctg-atttttgtagTATGGGCATTTGATACAGATACAGAGTGCTGGTCACCCATGGAAGCAAAGGGAGACATACCG
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G10310.1 (Glycine max), 3'ss of exon 7
gttgattttatatgttttgcatgtgtgtaattgcttctctttccccattttgtttctcagttgatgtgaaataaacctaactctctttttttgcttttgtagTGTGGGCATTTGACATAGAAACAGAGTGTTGGTCACTAATGGAAGCAAAGGGAGACATACCG
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gttcaccct-catcttcttcacatatgtaatagctt---tgtccttgttca----------tgctgcaaaattgttctaattgtctttctg-gtttttgtagTATGGGCGTTTGATACAGAGACAGAGTGCTGGTCACTCATGGAAGCAAAGGGAGACATACCA
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G38020.1 (Glycine max), 3'ss of exon 6
gttgattttatatgttttgcatgtgtgtaattgcttctctttccccattttgtttctcagttgatgtgaaataaacctaactctctttttt-tgcttttgtagTGTGGGCATTTGACATAGAAACAGAGTGTTGGTCACTAATGGAAGCAAAGGGAGACATACCG
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gttcaattcatgttctctacatgta-atagtt------------ctgtcctgctt----attgttgtgaaattgttctgattataattttggtgtttgtatagTATGGGCATTTGATACAGAGACAGAGTGCTGGTCACTCATGGAGGCAAAGGGGGACATACCG
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G02680.1 (Glycine max), 3'ss of exon 5
gttgattttatatgttttgcatgtgtgtaattgcttctctttccccattttgtttctcagttgatgtgaaataaacctaactctctttttt-tgcttttgtagTGTGGGCATTTGACATAGAAACAGAGTGTTGGTCACTAATGGAAGCAAAGGGAGACATACCG
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gttcaattcatgtttctc---tacatgtaatagtt---------ctgtcctgttt----attgttgtgaaagtgttctgattataattttggtgtttgtctagTATGGGCATTTGATACAGAGACAGAGTGCTGGTCACTCATGGAGGCCAAGGGGGACATACCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttgtttctcagttgatgtgaaataaacctaactctctttttttgcttttgtagTGTGGGCATTTGACATAGAAACAGAGTGTTGGTCACTAATGGAAGCAAAGGGAGACATACCG
acctaac putative branch site (score: 2)
cctaactctctttttt CT-rich tract
tgaaataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgattttatatgttttgcatgtgtgtaattgcttctctttccccattttgtttctcagttgatgtgaaataaacctaactctctttttttgcttttgtagTGTGGGCATTTGACATAGAAACAGAGTGTTGGTCACTAATGGAAGCAAAGGGAGACATACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG