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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccatttgattctcactttttaatttaacattgagcattggtataatgttttgcaaattaatagtttatcttcataattacacagGATCAAAGTTTTGTGCATGTTATGGTCCTTATGCAGGCGAATTTGGAAATTCCAGTGCTCCAG

Basic information

species Vitis vinifera
transcript Vv05s0020g00560.t01
intron # 7
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128544|gb|CB913883.1|CB913883
EST:     GTCTTGTTACAGTCTTGCCAAAGGAGGCAGTTGTAAAGGAGCTTACTGAA                         GATCAAAGTTTTGTGCATGTTATGGTCCTTATGCAGGCGAATTTGGAAATT
genomic: GTCTTGTTACAGTCTTGCCAAAGGAGGCAGTTGTAAAGGAGCTTACTGAAgtatccattt ... aattacacagGATCAAAGTTTTGTGCATGTTATGGTCCTTATGCAGGCGAATTTGGAAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagcattggtataatgttttgcaaattaatagtttatcttcataattacacagGATCAAAGTTTTGTGCATGTTATGGTCCTTATGCAGGCGAATTTGGAAATTCCAGTGCTCCAG
 tatcttcat  putative branch site 
           tataatgttttgcaaa  TA-rich tract