1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agggactggttttggtttgtattgttgtagttataccagctttcttgaaatatgaccttacatgtggctatttgtttcttaaatcctaatttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACAACGAAGACATCTTTACTTGATGACTTTATGTATTATGAAAACCGACAGA
species | Vitis vinifera |
transcript | Vv05s0020g00460.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAAATCACACEST: gi|30321411|gb|CD004673.1|CD004673
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAA-TCACAC
EST: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACAEST: gi|30129749|gb|CB915088.1|CB915088
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
EST: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACAEST: gi|30127739|gb|CB913078.1|CB913078
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
EST: GAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACAEST: gi|30134355|gb|CB919693.1|CB919693
genomic: GAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
EST: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACAEST: gi|71862152|gb|DT011207.1|DT011207
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
EST: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACAEST: gi|30321832|gb|CD005094.1|CD005094
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
EST: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACAEST: gi|27581269|gb|CB003964.1|CB003964
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
EST: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAG ATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
genomic: TAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttag ... ttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACA
tgaaatatgaccttacatgtggctatttgtttcttaaatcctaatttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACAACGAAGACATCTTTACTTGATGACTTTATGTATTATGAAAACCGACAGA
tcctaat putative branch site (score: 2)
tttttctgc CT-rich tract
tatttgtttcttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggactggttttggtttgtattgttgtagttataccagctttcttgaaatatgaccttacatgtggctatttgtttcttaaatcctaatttttctgcagATAAGATTTAAGCAAGGCCTGGAAATGTTGAAAATATTCAAAAATCACACAACGAAGACATCTTTACTTGATGACTTTATGTATTATGAAAACCGACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- ggactgg
- - - - - - tggtttg
- - - - - - - - - - - - - - - - - -ccagctt
- - - - - - - - - - - - - - - - - - - - - - -tgaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtgg