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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaaaatctccttttcctacatctttgccttttcaaatgcctcacttcttctttttttttcctgtaattgaaatatatggcacatgatctccagttgcatcgaacttgatattcaattatttgtcacttcgtgacagGTCATATTGTGTGGTCTCATTGGAATCCCTCCAGCAAATGGTGTCATTCCACAATCTCCAATGCATACCAAAAGTTTGGCTACACTTAAGCATCAG

Basic information

species Vitis vinifera
transcript Vv05s0020g00440.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G14520.1 (Glycine max), 3'ss of exon 12
---------------------------------gtatgaaaaatctccttttcctacatctttgccttttcaaatgc-ctcacttcttctttttttttcctgtaattgaaatatatggca-catgatctccagttgcatcgaacttgatattcaatt------------atttgtcac-ttcgtgacagGTCATATTGTGTGGTCTCATTGGAATCCCTCCAGCAAATGGTGTCATTCCACAATCTCCAATGCATACCAAAAGTTTGGCTACACTTAAGCATCAG
                                 |  |  | ||  |   |||  | | | |     ||||| ||||| ||   || | ||||    ||   |         ||||||||  | |||| |     || |  |||  || |  |   ||            || ||| |  ||  |||||||| ||| | |||||||| |||||||| |||||  |||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||| |||
gtacatgatactcgttgctcttttttatcctttgcttatataaaattgctttggtgc-tttgccttttttctaatgctctttgttttcctttcgaatttgagatgacattgtatatggcctcctgatttgtttgtgaactgaatgtggtccttggttgtgacacatttgatatgttatattaatgacagGTTATAATATGTGGTCTAATTGGAATTCCTCCGTCAAATGGTGTCATTCCACAATCTCCAGTGCATACCAAAAGTTTAGCTACATTGAAGCACCAG

upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G03600.1 (Glycine max), 3'ss of exon 10
------------------------------------gtatgaaaaatctccttttcctacatctttgccttttcaaatgcctcacttcttctttttttttcctgtaattgaaatatatggcacatgatctccagttgca--tcgaacttgatattcaatt-------atttgtcacttcg------tgacagGTCATATTGTGTGGTCTCATTGGAATCCCTCCAGCAAATGGTGTCATTCCACAATCTCCAATGCATACCAAAAGTTTGGCTACACTTAAGCATCAG
                                     ||| |||||  |  |||   ||  |   |   ||| | |||||      | |||  |||      ||  ||   | | | ||  || |  |     | || |    |||  ||||     |||       |||||  |  | |      ||  |||| ||| | || ||||| |||||||| || ||  ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||
gtacatgatactccttgctctttttgatcctttgatttataaaaaaattgttttggttatttgcct-tttttcccaatgctctttgttttccctttggaatttgagatgacattgtgtgtgacctcctgatttgctgtaagctgaatgtgatccgtgattgtgacacatttgatatcttgaataaatgttagGTTATAATATGCGGTCTAATTGGAATTCCCCCGTCAAATGGTGTCATTCCACAATCTCCAATGCATACCAAAAGTTTAGCTACATTGAAGCACCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgatctccagttgcatcgaacttgatattcaattatttgtcacttcgtgacagGTCATATTGTGTGGTCTCATTGGAATCCCTCCAGCAAATGGTGTCATTCCACAATCTCCAATGCATACCAAAAGTTTGGCTACACTTAAGCATCAG
                     acttgat  putative branch site (score: 5)
                                         tcacttc  putative PPT
                       ttgatattcaattatt  TA-rich tract