Sequence
atgc intronic sequence ATGC exonic sequencegtatgtaatcttattttaaagtaatttgtgagcaactctgattaatatttgaatatgtacaactttgactaactatgggaattttgaacaggcagtatctgatttaagctttgatctaacttgtttttattgtttcagTTGCAACATGACTATATATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G423861_T01 (Zea mays), 3'ss of exon 7
gtatgtaatcttattttaaagtaatttgtgagcaactctgattaatatttgaatatgtacaactttgactaactatgggaattttgaacaggcagtatctgatttaagctttgatctaacttgtttttattgttt--cagTTGCAACATGACTATATATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTT
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--------------------------------------------------------gtactgaag-gattgccagtttgtgtgttattcaagtaatct-tggttcaaaaatagagctaacaagtaac-attgttctgcagTTGCAACATGATTACATTTTGGGAAACTATCCTGTTGGCAGGGATGATGCTTCACAACTCTCTGCTCTGCAAATCTTGGTTGAGATTGGATTCATCGACA
upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G070273_T01 (Zea mays), 3'ss of exon 6
gtatgtaatcttattttaaagtaatttgtgagcaactctgattaatatttgaatatgtacaactttgactaactatgggaattttgaacaggcagtatctgatttaagctttgatctaacttgtttt-tattgtttcagTTGCAACATGACTATATATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTT
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--------------------gta-ctggttgatagtattcatagctagctaact--gaaggactgccagtttgtgtgttattgttactcaagtaatat-tgtttccagaatagatctaacaaatatcatttttctgcagTTGCAACATGATTACATTTTGGGAAACTATCCTGTCGGCAGGGATGATGCTTCACAACTCTCTGCTCTTCAGATCTTGGTTGAGATTGGATTCATTGATA
upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G35950.1 (Glycine max), 3'ss of exon 8
gtatgtaatcttattttaaagtaatttgtgagcaactctgattaatatttgaatatgtacaactttgactaactatgggaattttgaacaggcagtatctgatttaagctttgatctaacttgtttttattgtttcagTTGCAACATGACTATATATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTT
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gtatgcattcttatttc----tgttctatgaatgaataagagtatatcttgttattgaataa--------aactgcaattaccttgaa--gatattacatcattggtgcatggatgta-----------ttgttacagTTGCAGCATGATTATATTTTGGGTAATTACCCTATTGGAAGGGATGATGCTGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAA
upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G32740.1 (Glycine max), 3'ss of exon 8
gtatgtaatcttattttaaagtaatttgtgagcaactctgattaatatttgaatatgtacaactttgactaactatgggaattttgaacaggcagtatctgatttaagctttgatctaacttgtttttattgtttcagTTGCAACATGACTATATATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTT
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-------------------------gtatgccttttcattatgaaaccttacctgatgacaagtatatctagtttatgtacaaagctgcaattaccttcaagttatagatttgctgatactggatgt-gttgttacagATGCAACATGATTATATTTTGGGAAATTACCCTATTGGAAGGGATGATGCTGCTCAGCTCTCTGCATTACAAATTTTGGCTGAGATTGGATTTCTCAACA
upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G09480.1 (Glycine max), 3'ss of exon 8
gtatgtaatcttattttaaagtaatttgtgagcaactctgattaatatttgaatatgtacaactttgactaactatgggaattttgaacaggcagtatctgatttaagctttgatctaacttgtttttattgtttcagTTGCAACATGACTATATATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTT
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gtatgtctttttgtttctgttctatcaatgaataagagtatatcttgtt--attgaataaaactgcaattaccttcaaga------------tattacatcattggtgcatggat-------gcttt----gttacagTTGCAGCATGACTATATTTTGGGTAATTACCCTATTGGAAGGAATGATGCAGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAA
upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G21340.1 (Glycine max), 3'ss of exon 11
gtatgtaatcttattttaaagtaatttgtgagcaactctgattaatatttgaatatgtacaactttgactaactatgggaattttgaacaggcagtatctgatttaagctttgatctaacttgtttttattgtttcagTTGCAACATGACTATATATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTT
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--------------------------------aaagataaagaaataagacaactaaagaattcaagattagatatgataatcctaatttgtgaccatatcatttttg--ttgatac----tggatgtgttggtacagATGCAACATGATTATATTTTGGGAAATTACCCTGTTGGAAGGGATGATGCTGCTCAGCTTTCTGCCTTACAAATCTTAGCTGAGATTGGATTTCTTAGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaacaggcagtatctgatttaagctttgatctaacttgtttttattgtttcagTTGCAACATGACTATATATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTT
atctaac putative branch site (score: 2)
tttttatt putative PPT
taacttgtttttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtaatcttattttaaagtaatttgtgagcaactctgattaatatttgaatatgtacaactttgactaactatgggaattttgaacaggcagtatctgatttaagctttgatctaacttgtttttattgtttcagTTGCAACATGACTATATATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT