Sequence
atgc intronic sequence ATGC exonic sequence...cattggatgtgagggaagaaacttgtttctatggtttacctatatctcatattgattttggaattgacatgccttttttgctttcttacttattgcatagGTTATCGTGAAGAGTGGAGATGATTGTAGGCAGGAGCATCTTGCCGTGCAACTTATTTCTCATTTCTATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G32460.1 (Glycine max), 3'ss of exon 7
--cattggatgtgagggaagaaacttgtttctatggtttacctatatctcatattgattttggaattgacatgccttttttgctttcttacttattgcatagGTTATCGTGAAGAGTGGAGATGATTGTAGGCAGGAGCATCTTGCCGTGCAACTTATTTCTCATTTCTATG
||| | | || | | | || | || || | | || || | | |||| | | |||| || | |||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||||||||| |||||||
attattatttataagtatggtggttggctttt-tgtattgtattagttattggttatttgtcttttgagcatgatggtgtaattttccc-tttctcacatagGTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAACTTATTTCTCACTTCTATG
upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G39150.1 (Glycine max), 3'ss of exon 8
cattggatgtgagggaagaaacttgtttctatggtttacctatatctcatattgattttggaattgacatgccttttttgctt--tcttacttattgcatagGTTATCGTGAAGAGTGGAGATGATTGTAGGCAGGAGCATCTTGCCGTGCAACTTATTTCTCATTTCTATG
|| | || || | |||||| | |||| || | | | | ||| | | | || | | | | | |||||||||| || |||||||| ||||||||||||||||||||||| || || ||||||||||| || |||||||
--ttttgttctagatgagttatttgtttattctgtttgaggatgcatgctttaagatcacaaatcttttgagcatgatagcacaatttcccctttgacatagGTTATTGTAAAGAGTGGGGATGATTGTAGGCAGGAGCATCTGGCAGTTCAACTTATTTCACACTTCTATG
upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G16620.1 (Glycine max), 3'ss of exon 9
cattggatgtgagggaagaaacttgtttctatggtttacctatatctcatattgatt-ttggaatt---gacatgccttttttgctttcttacttattgcatagGTTATCGTGAAGAGTGGAGATGATTGTAGGCAGGAGCATCTTGCCGTGCAACTTATTTCTCATTTCTATG
||| | | | || || ||||| | | | | | |||| || || | || |||| | |||| | || | |||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||||||||| |||||||
-attattattattattatta--ttattatggtggttggcttttgtattttattagttatttgtcttttaagcatgatgatgcaattttcct-tttctcacatagGTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAACTTATTTCTCACTTCTATG
upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G15820.1 (Glycine max), 3'ss of exon 8
cattggatgtgagggaagaaacttgtttctatggtttacctatatctcatattgattttggaattgacatgccttttt--tgctttcttacttattgcatagGTTATCGTGAAGAGTGGAGATGATTGTAGGCAGGAGCATCTTGCCGTGCAACTTATTTCTCATTTCTATG
|| || || || | || || | || ||| || | | | | | ||| || | | | | | | ||| | |||||||| || |||||||| ||||||||||||||||||||||| || || ||||||||||| || ||||| |
-tttttattctagatgagttatttattattctg-tttgaggatgtatgctttaagatcacaaatcttttgaccatgatagtacaatttcccttttgatgtagGTTATTGTAAAGAGTGGGGATGATTGTAGGCAGGAGCATCTGGCAGTTCAACTTATTTCACACTTCTACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcatattgattttggaattgacatgccttttttgctttcttacttattgcatagGTTATCGTGAAGAGTGGAGATGATTGTAGGCAGGAGCATCTTGCCGTGCAACTTATTTCTCATTTCTATG
ttcttac putative branch site (score: 2)
ccttttttgctttctt CT-rich tract
attgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cattggatgtgagggaagaaacttgtttctatggtttacctatatctcatattgattttggaattgacatgccttttttgctttcttacttattgcatagGTTATCGTGAAGAGTGGAGATGATTGTAGGCAGGAGCATCTTGCCGTGCAACTTATTTCTCATTTCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - ggatgtg
- - - - - - -ggaagaa