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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttcttcatgccagtgttatgtagactgtaattacaaatctataatgtattacttaatatgcagagattcatgtagagttgggttttcaatttgcagGGACAAACCCCTTTATTTCCTCGTATATTTGGTCATGAGGCTGGCGG

Basic information

species Vitis vinifera
transcript Vv04s0044g01120.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161711858|gb|FC058759.1|FC058759
EST:     TTCTCTTCACCTCCCTCTGCCATACTGATGTTTACTTCTGGGAAGCCAAG                         GGACAAACCCCTTTATTTCCTCGTATATTTGGTCATGAGGCTGGCGG
genomic: TTCTCTTCACCTCCCTCTGCCATACTGATGTTTACTTCTGGGAAGCCAAGgtaacttctt ... caatttgcagGGACAAACCCCTTTATTTCCTCGTATATTTGGTCATGAGGCTGGCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgtattacttaatatgcagagattcatgtagagttgggttttcaatttgcagGGACAAACCCCTTTATTTCCTCGTATATTTGGTCATGAGGCTGGCGG
         acttaat  putative branch site (score: 4)
                                         ttttc  putative PPT
     tattacttaatat  TA-rich tract