Sequence
atgc intronic sequence ATGC exonic sequence...atgcatcatcttttgagattaaacaactactcacagcttttaatcaatattttgaatctatttggtgggacctcacttttggtgtgatgtttgaaattagGAAGGATTGTTGAGTTACTAGATGCTTTAGAAGCCATGGCCAAAGATAACCAACCAATTCCACCAAGAGCCATGATTTTGAGTAGAAAATACCGTACATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0043g00700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G31180.1 (Glycine max), 3'ss of exon 7
atgcatcatcttttgagattaaacaactactcacag---cttttaatcaatattttgaatctatttggtgggacctcacttttggtgtgatgtttgaaattagGAAGGATTGTTGAGTTACTAGATGCTTTAGAAGCCATGGCCAAAGATAACCAACCAATTCCACCAAGAGCCATGATTTTGAGTAGAAAATACCGTACATT
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ttgccttctctctggagttcaatttatagttcataaaatcttatgaccaaaattctcttggaatgctttg---cctcaacctagttgtcatttttaaattcagGAAGAATTGTTGAAATGCTTGAAGCTTTAGAAGCTATGGCCAAAGATAACCAGCCAATCCCCTCACGGGCAATGATCTTGAGCAGAAAATACCGGACATT
upper sequence: Vv04s0043g00700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G36340.1 (Glycine max), 3'ss of exon 7
---atgcatcatcttttgagattaaacaactactcacagcttttaatcaatattttgaatctatttggtgggacctcacttttggtgtgatgtttgaaattagGAAGGATTGTTGAGTTACTAGATGCTTTAGAAGCCATGGCCAAAGATAACCAACCAATTCCACCAAGAGCCATGATTTTGAGTAGAAAATACCGTACATT
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gtattgccttctctctggagttcaatttaagtttataaaattttgagcaaaattgtc--tcggaatgctttg-cctcaacctagttgtcatttttaaattcagGAAGAATTGTTGAAATGCTTGAAGCTTTAGAAGCTATGGCCAAAGACAACCAGCCAATCCCCTCGCGGGCAATGATTTTGAGCAGAAAATACCGGACATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatattttgaatctatttggtgggacctcacttttggtgtgatgtttgaaattagGAAGGATTGTTGAGTTACTAGATGCTTTAGAAGCCATGGCCAAAGATAACCAACCAATTCCACCAAGAGCCATGATTTTGAGTAGAAAATACCGTACATT
acctcac putative branch site (score: 3)
tttgaaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgcatcatcttttgagattaaacaactactcacagcttttaatcaatattttgaatctatttggtgggacctcacttttggtgtgatgtttgaaattagGAAGGATTGTTGAGTTACTAGATGCTTTAGAAGCCATGGCCAAAGATAACCAACCAATTCCACCAAGAGCCATGATTTTGAGTAGAAAATACCGTACATT
- -catcatc
- - - - - - - - - -taaacaa
- - - - - - - - - - - - - - actcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggg