Sequence
atgc intronic sequence ATGC exonic sequencegtacttatttttcttcttcttgtgagagcagaatttttgaaacttcaatatctgagtttattatttggctttccagTTTCCTAGCTGGTGTTTTAGCATCGAAGGATCCGCAAGTTTTGATTCCTGGCCTCCAAATGGCTGAGATTCTCATGGAAAAGCTTCCTAAAACTTTCTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G03640.1 (Glycine max), 3'ss of exon 7
--------gtacttatttttcttcttcttgtgaga-------gcagaatttttgaaacttcaatatctgagt-ttatta-tttggctttccagTTTCCTAGCTGGTGTTTTAGCATCGAAGGATCCGCAAGTTTTGATTCCTGGCCTCCAAATGGCTGAGATTCTCATGGAAAAGCTTCCTAAAACTTTCTCC
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gtatgttgaaatttaattgagttgatattgcttgataccctcactgattttatgggtttagaaaatttatgcattgttgctttgatcatatagTTTCTTAGCTGGCGTCTTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCTCC
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G00600.2 (Glycine max), 3'ss of exon 7
gtactta---tttttcttc--ttcttgtgagagcagaatttttgaaacttcaatatctgagtttattatttggctttccagTTTCCTAGCTGGTGTTTTAGCATCGAAGGATCCGCAAGTTTTGATTCCTGGCCTCCAAATGGCTGAGATTCTCATGGAAAAGCTTCCTAAAACTTTCTCC
||| ||| || || || ||| | | | || | || | || || |||| | |||||| |||||||||| ||||||| ||| ||||| || |||||| |||||| | | ||||| | || ||||| ||||||||||||||| || ||||||
gtatttagaacttcaattgggttgctgttgctctatgttctctgtagaa--aacttatgcattgtcactttgatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCAGAAATTCTTATGGAAAAGCTTCCTGGAATTTTCTCT
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G00530.1 (Glycine max), 3'ss of exon 7
gtacttat--ttttcttcttcttgtgagagcagaatttttgaaacttcaatatctgagt-ttatta-tttggctttccagTTTCCTAGCTGGTGTTTTAGCATCGAAGGATCCGCAAGTTTTGATTCCTGGCCTCCAAATGGCTGAGATTCTCATGGAAAAGCTTCCTAAAACTTTCTCC
||| || || | ||| || || || | |||| | | || | | |||| | |||||| |||||||||| ||||||| ||| ||||| || |||||| |||||| | | ||||| | || ||||| ||||||||||||||| ||| |||||
gtatctagaacttcaattgggttgctgttgctctatgttctctg-tagaatacttatgcattgtcactttgatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCGGAAATTCTTATGGAAAAGCTTCCTGGAACCTTCTCT
upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G11490.2 (Glycine max), 3'ss of exon 7
------------gtacttatttttcttcttcttgtgagagca--gaatttttgaaacttcaatatctgagt-ttatta-tttggctttccagTTTCCTAGCTGGTGTTTTAGCATCGAAGGATCCGCAAGTTTTGATTCCTGGCCTCCAAATGGCTGAGATTCTCATGGAAAAGCTTCCTAAAACTTTCTCC
|| || || | | |||| | | || ||| || | || || | | || || |||| | |||||| ||||||| || |||||| ||| ||||| || |||||| |||||| | | |||| ||||| ||||| |||||||||||||| || ||||||
gtatgtagaagtttaattgggttgatattgcttgatatcctactgattttatgggtttagaaaatttatgcattgttgctttgatcatatagTTTCTTAGCTGGCGTCCTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCCGGGACATTCTCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgagagcagaatttttgaaacttcaatatctgagtttattatttggctttccagTTTCCTAGCTGGTGTTTTAGCATCGAAGGATCCGCAAGTTTTGATTCCTGGCCTCCAAATGGCTGAGATTCTCATGGAAAAGCTTCCTAAAACTTTCTCC
ctttcc CT-rich tract
aatttttgaaactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacttatttttcttcttcttgtgagagcagaatttttgaaacttcaatatctgagtttattatttggctttccagTTTCCTAGCTGGTGTTTTAGCATCGAAGGATCCGCAAGTTTTGATTCCTGGCCTCCAAATGGCTGAGATTCTCATGGAAAAGCTTCCTAAAACTTTCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA