Sequence
atgc intronic sequence ATGC exonic sequence...aaatgaaaacttatgtgctagaggttgggcaaagcctacatataacattcaaaacatgagtatttcttatgtatttcttatgacctgtcgaatcttttagGTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G17160.1 (Glycine max), 3'ss of exon 5
aaatgaaaacttatgtgctagaggttgggcaaagcctacatataacattcaaaaca-tgagtatttcttatgta------tttcttatgacctgtcgaatcttttagGTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAA
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------ttatcttgactttagaaactgtgatgttattattcatatgattgatggtaatgatccctgcccaaaaaatgacctttcatttggtcttgccaaaagtt-agGTATGCACTGCAGTGGGAGTCTAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA
upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G24310.1 (Glycine max), 3'ss of exon 7
aaatgaaaacttatgtgctagaggttgggcaaagcctacatataacattcaaaacatgagtatttcttatg-tatttcttatga-cctgtcgaatcttttagGTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAA
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ttatcttgactttagaaatcgtgatgttattattcatatgattgacggtgatgatccctgcctaaaaaatgacctttcatttggtcttgccaaaactt--agGTATGCACTGCAGTGGGAGTCCAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA
upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G05680.1 (Glycine max), 3'ss of exon 7
aaatgaaaacttatgtgctagaggttgggcaaagcctacatataacattcaaaacatgagtatttcttatg-tatttcttatgacctgtcgaatcttttagGTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAA
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ttatcttaactttaaaacctgtgatgttattatttttatgattgatggtgatgatccctgccaaaaaaatgacctttcacatggtcttgccaaaagtt-agGTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA
upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G37420.1 (Glycine max), 3'ss of exon 7
---aaatgaaaacttatgtgctagaggttggg-caaagcctacatataacattcaaaacatgagtatttcttatgtatttcttatgacctgtcgaatcttttagGTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAA
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aataagtgattgttactctagaagcaattgtttccaaagaagcgcataa---ttgtggccttgctactcaaatgacatttcatatggccttgccaaaagtt-agGTATGCACTGAAGTGGGAGTCCAAGAATCTATTTGCCCTGAGCACTGCAATTCAGGATTGGCTTACTTCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattcaaaacatgagtatttcttatgtatttcttatgacctgtcgaatcttttagGTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAA
tctttt CT-rich tract
tatttcttatgtattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaatgaaaacttatgtgctagaggttgggcaaagcctacatataacattcaaaacatgagtatttcttatgtatttcttatgacctgtcgaatcttttagGTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAA
aaatgaa
- - - - - -tatgtgc
- - - - - - - - - - - ggttggg
- - - - - - - - - - - - - - - - -gcctaca
- - - - - - - - - - - - - - - - - - - - - - - - - aaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgtcg