Sequence
atgc intronic sequence ATGC exonic sequencegtgagtatcacaagtgtagttggatatctatgaggttcaatctttgtttttgttttctaaagttttttcgggttgttttctttttcttaatcccagGAAATTCATGCACTAAGGGCTCAGTTAGAAGCTGCAAAGTATGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02930.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os06g49890.1 (Oryza sativa), 3'ss of exon 6
gtgagtatcacaagtgtagttggatatctatgaggttcaatctttgtttttgttttctaaagttttttcgggttgttttcttt-ttcttaatcccagGAAATTCATGCACTAAGGGCTCAGTTAGAAGCTGCAAAGTATGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTACTG
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---------gtgagtaaagtggccttcatgtgtgggc---tctgttatctcactgtcgggcattaacagggtttgtctgatttgctactgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATCAAGTACTGCATAGGTACCATTGTTTCGATATCAGCTGTTGGACTCGCCG
upper sequence: Vv04s0023g02930.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G116427_T01 (Zea mays), 3'ss of exon 6
gtgagtatca--caagtgtagttggatatctatgaggttca-atctttgtttttgttttctaaagttttttcgggttgttttctttttcttaatcccagGAAATTCATGCACTAAGGGCTCAGTTAGAAGCTGCAAAGTATGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTACTG
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gtgagtggtagtaaactaaggccgcatgcccatgctttccgtgtcatcgtttacatc----agagaccaaccaaaatgttttgccggccata--tgcagGAAATCCACTCACTGAAGGCCCAGTTGGAGGCAGCAAAGTACGATGTCATCAAGTACTGCATAGGTACCATTGTTTCGATCTCAGCCGTCGGCCTCGCCG
upper sequence: Vv04s0023g02930.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G17170.1 (Glycine max), 3'ss of exon 7
gtgagtatcacaagtgtagttggatatctatgaggttcaatctttgtttttgttttctaaagttttttcgggtt--gttttctttttcttaatcc-----cagGAAATTCATGCACTAAGGGCTCAGTTAGAAGCTGCAAAGTATGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTACTG
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---tatgaaacaagccttatgtgacatttagaagttgttatttcatcccatggaaacttggctatttgcattttaaacaccctttgctataattcatattcagGAGATCCATTCTTTAAGAGCACAACTGGAAGCAGCCAAATATGATGTCATAAAATACTGCATAGGAACACTTGTTTCGATCTCTGCTGTTGGTCTTGCTG
upper sequence: Vv04s0023g02930.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G51090.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgagtat-cacaagtgtagttggatatctatgaggttcaatctttgtttttgttttctaaagttttttcgggttgttttctttttcttaatcccagGAAATTCATGCACTAAGGGCTCAGTTAGAAGCTGCAAAGTATGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTACTG
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gttagtattctcatctctagct-----tctgt----ttgaattattcgttttggtagcaaaagtgtttatgctttgttctgttttcaatattttcagGAGATTCACACTTTGAGAGCTCAGTTAGAAGCAGCCAAGTATGAGGTGATCAAGTACTGTATTGGTACTCTTGTCTCCATCTCAGCCGTTGGTCTCGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttgtttttgttttctaaagttttttcgggttgttttctttttcttaatcccagGAAATTCATGCACTAAGGGCTCAGTTAGAAGCTGCAAAGTATGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTACTG
ttgttttctttttctt CT-rich tract
tttttgttttctaaag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtatcacaagtgtagttggatatctatgaggttcaatctttgtttttgttttctaaagttttttcgggttgttttctttttcttaatcccagGAAATTCATGCACTAAGGGCTCAGTTAGAAGCTGCAAAGTATGATGTGATAAAATACTGCATAGGTACCCTTGTTTCTATTTCAGCTGTGGGTCTTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG