Sequence
atgc intronic sequence ATGC exonic sequence...tctgtacattttataaaattcatcatttttctttggactctgcttatttgaagtaatggtatctttctacagaatttctcattgcaaatgttgaattcagTTTGAATGTAGGGAATTTAGAGAATCAATCCTTGGAGTTATGCCACATCACTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os02g01070.1 (Oryza sativa), 3'ss of exon 5
---tctgtacattttataaaattcatcatttttctttggactctgcttatttgaagtaatggt-atctttctacagaatttctcattgcaaatgttgaattcagTTTGAATGTAGGGAATTTAGAGAATCAATCCTTGGAGTTATGCCACATCACTGG
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aatgtcaaatgtgctgttat-tttaccacaagatgctacacagttggttcttgtagtaaatatgatctcattacaag--ctaacatggcatatat-ggtttcagTTCGAATGTCGGGAATTTAGAGAATCAGTTCTTGGGGTCATGCCTCATCATTGG
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G07720.1 (Glycine max), 3'ss of exon 7
-----tctgtacattttataaaattcatcatttttctttggactctgcttatttgaagtaatggtatctttctacagaatttctcattgcaaatgttgaattc-agTTTGAATGTAGGGAATTTAGAGAATCAATCCTTGGAGTTATGCCACATCACTGG
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acatagtggagtattttgtttaaatt-taatgttattgtgaaatc-----attgtaattatagatatcctcctaaaggttgcttcctgtgacatatgaaattctagTTTGAATGCAGGGAATTCAGAGAATCGATCCTGGGAGTTATGCCTCATCAATGG
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G37580.1 (Glycine max), 3'ss of exon 7
-tctgtacattttata-aaattcatcatttttctttggactctgcttatttgaagtaatggtatctttctacagaatttctcattgcaaatgttgaattc-agTTTGAATGTAGGGAATTTAGAGAATCAATCCTTGGAGTTATGCCACATCACTGG
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aatagagtattttgtttaaatttaatgttattgtaaaatctttgttttt---aattatagatatcctcctaaaggttgcttcctgtgacatgtgaaattctagTATGAATGCAGGGAATTCAGAGAATCAATCCTGGGAGTTATGCCTCACCAATGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttgaagtaatggtatctttctacagaatttctcattgcaaatgttgaattcagTTTGAATGTAGGGAATTTAGAGAATCAATCCTTGGAGTTATGCCACATCACTGG
aagtaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctgtacattttataaaattcatcatttttctttggactctgcttatttgaagtaatggtatctttctacagaatttctcattgcaaatgttgaattcagTTTGAATGTAGGGAATTTAGAGAATCAATCCTTGGAGTTATGCCACATCACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - ataaaat
- - - - - - - - - - - - - - - - - - actctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaatg