Sequence
atgc intronic sequence ATGC exonic sequence...gtgcagagtagcaaacctttgttcaataattgtagcctttttgtttctgtaaccctatcaattttttttttaaatctttaattgtatttgttatcctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCATGTATGGTGAAGCTTGGACATCATAGTTATACTGCACATTTGTAACTTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G25190.1 (Glycine max), 3'ss of exon 9
----gtgcagagtagcaaacctttgttcaataattgtagcctttttgtttctgtaaccctatcaattttttttttaaatctttaattgtatttgttatcctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCATGTATGGTGAAGCTTGGACATCATAGTTATACTGCACATTTGTAACTTTA-
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gttcaagttgcatggagcatcttagtccatagactttattatgaacgacctcttattttggct--ttctttgttttgcttttttccccccttcaatatcc--agGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAGCACACACTGTTCTGTTTTTTAACATTCCCCTTTGCAAGAGA-GCAGTTCCCTTACCTAGCAATAT
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G06160.1 (Glycine max), 3'ss of exon 14
gtgcagagtagcaaacctttg--ttcaataattg-tagcctttttgtttctgtaaccctatcaattttttttttaaatctttaattgtatttgttatcctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCATGTATGGTGAAG--CTTGGACATCATAGTTATACTGCACATTTGTAACTTTA
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---gagcatcttagtccttggactttattaattgattattatgatcgacctctcattttgtctttctttgttttcctttctttgcctccttttcaatatccagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAGCACACACTGTTCTGTTTTTGAACATGTCCCTTTGCAAGAGAGCAGCTCCCTTCCCTAGCAATGT--
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G25150.1 (Glycine max), 3'ss of exon 7
gtgcagagtagcaaacctttgttcaataattgtagccttt-ttgtttctgtaaccctatc--aattttttttttaaatctttaattgtatttgttatcctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCATGTATGGTGAAGCTTGGACATCATAGTTATACTGCACATTTGTAACTTTA
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gttca-agttgcatggagcatcttag--accatagactttattatgaacgaccccttattttggctttctttgtttttcttttttccccctttcaatatccagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAG----------------------------------------------------------------
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G07550.1 (Glycine max), 3'ss of exon 12
-gtgcagagtagcaaacctttgttcaataattgtagc----ctttttgtttctgtaaccctatcaattttttttttaaatctttaattgtatttgttatcctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCATGTATGGTGAAGCTTGGACATCATAGTTATACTGCACATTTGTAACTTTA---
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agttggtcattgtcaatgtacaatctcacgtcatgacaatgctttgtagtttgataaagct-tcatatacttcattaattattatactttacgtact----tcagGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGTAACATG---CCTGGCAGCCAAGGTCTGTTTTTTTCTCCCTCCCTGTCTCTTGCAAGTGTGTATAGAAGC
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G37760.1 (Glycine max), 3'ss of exon 7
----gtgcagagtagcaaacctttgttcaataattgtagc-ctttttgtttctgtaaccctatcaattttttttttaaatctttaattgtatttgttat-cctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCATGTATGGTGAAGCTTGGACATCATAGTTATACTGCACATTTGTAACTTTA----
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gccattgtcaatgtacaatctcacgtcatttaatggcaaagctttgtagtttgataaagct------tcatatactacattaattattatacttaatgtacttcagGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGTAAC----AGCCTGGCAGCCCAGGTCTGTTTTTTTCTCCCTCCCTGTCTCTTGCAAGTGTGTATAGAAGCT
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G36520.1 (Arabidopsis thaliana), 3'ss of exon 7
gtgcagagtagcaaacctttgttcaataattgtagcctttttgtttctgtaaccctatcaattttttttttaaatctttaattgtatttgtta-tcctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCATGTATGGTGAAGCTTGGACATCATAGTTATACTGCACATTTGTAACTTTA
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-------gtattggttcatgttctgttacacctttttacacagtctctgaattgctcattcaagaatctggaattgtcttaatgttctaattaatatccagGAAGCTTGGAACAGATTCAACTCAGAAGGACGTTGA----------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110363374|gb|EC926957.1|EC926957EST: CAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAG GAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCAT
genomic: CAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcacc ... ttatcctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgtaaccctatcaattttttttttaaatctttaattgtatttgttatcctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCATGTATGGTGAAGCTTGGACATCATAGTTATACTGCACATTTGTAACTTTA
ttatcctc CT-rich tract
tatcaatttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcagagtagcaaacctttgttcaataattgtagcctttttgtttctgtaaccctatcaattttttttttaaatctttaattgtatttgttatcctcagGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTGACCCAGGCTTTTGCATGTATGGTGAAGCTTGGACATCATAGTTATACTGCACATTTGTAACTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - -caaacct
- - - - - - - - - - - - - - - tgtagcc
- - - - - - - - - - - - - - - - - - - - - - - - - aacccta