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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagtttgttaaaggatattctctgttatacttttctgctgagctccttcttttacatgctgattattccctgggtcacgcttatgatggtgaattgtgttcagATTGAGGAGGGGATCTCTTTAAATGTCGCTGGGGGTTTAATGCTCGAACATCCACTAACGTTGCCTTTTGTCGAATCTGTG

Basic information

species Vitis vinifera
transcript Vv04s0023g01800.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110421805|gb|EC988106.1|EC988106
EST:     GTTTATTTTTATGACATTCCAGACGAAGTCATTGATAACATG                         ATTGAGGAGGGGATCTCTTTAAATGTCGCTGGGGGTTTAATGCTCGAACAT
genomic: GTTTATTTTTATGACATTCCAGACGAAGTCATTGATAACATGgtaaaagttt ... ttgtgttcagATTGAGGAGGGGATCTCTTTAAATGTCGCTGGGGGTTTAATGCTCGAACAT
EST: gi|30320677|gb|CD003939.1|CD003939
EST:     GTTTATTTTTATGACATTCCAGACGAAGTCATTGATAACATG                         ATTGAGGAGGGGATCTCTTTAAATGTCGCTGGGGGTTTAATGCTCGAACAT
genomic: GTTTATTTTTATGACATTCCAGACGAAGTCATTGATAACATGgtaaaagttt ... ttgtgttcagATTGAGGAGGGGATCTCTTTAAATGTCGCTGGGGGTTTAATGCTCGAACAT
EST: gi|18459211|gb|BM437489.1|BM437489
EST:     GTTTATTTTTATGACATTCCAGACGAAGTCATTGATAACATG                         ATTGAGGAGGGGATCTCTTTAAATGTCGCTGGGGGTTTAATGCTCGAACAT
genomic: GTTTATTTTTATGACATTCCAGACGAAGTCATTGATAACATGgtaaaagttt ... ttgtgttcagATTGAGGAGGGGATCTCTTTAAATGTCGCTGGGGGTTTAATGCTCGAACAT
EST: gi|30321195|gb|CD004457.1|CD004457
EST:     GTTTATTTTTATGACATTCCAGACGAAGTCATTGATAACATG                         ATTGAGGAGGGGATCTCTTTAAATGTCGCTGGGGGTTTAATGCTCGAACAT
genomic: GTTTATTTTTATGACATTCCAGACGAAGTCATTGATAACATGgtaaaagttt ... ttgtgttcagATTGAGGAGGGGATCTCTTTAAATGTCGCTGGGGGTTTAATGCTCGAACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttacatgctgattattccctgggtcacgcttatgatggtgaattgtgttcagATTGAGGAGGGGATCTCTTTAAATGTCGCTGGGGGTTTAATGCTCGAACATCCACTAACGTTGCCTTTTGTCGAATCTGTG
        tgctgat  putative branch site (score: 3)
           tgattatt  TA-rich tract