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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttaagagaccttgttgtgatcatcccagcattacacattgaaaataaatttgaacggggataattgattgttatactggtgtagGCATGAATAGAAGTCATTGGATGCTCTAGTGACGGTGGACGTGTTTTTCATTACCTCGGATAAGTTGATGGCTCATAGATGTGCAGTATGGGTAGTTCCC

Basic information

species Vitis vinifera
transcript Vv04s0023g01770.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122691221|gb|EC970129.1|EC970129
EST:     CTATCACACTTGTCCCTAAGTCCATTTCTGGTTGGCGAAGTTGATAGCAT                         GCATGAATAGAAGTCATTGGATGCTCTAGTGACGGTGGACGTGTTTTTCAT
genomic: CTATCACACTTGTCCCTAAGTCCATTTCTGGTTGGCGAAGTTGATAGCATgtgagtttaa ... actggtgtagGCATGAATAGAAGTCATTGGATGCTCTAGTGACGGTGGACGTGTTTTTCAT
EST: gi|161719015|gb|FC067635.1|FC067635
EST:     CTATCACACTTGTCCCTAAGTCCATTTCTGGTTGGCGAAGTTGATAGCAT                         GCATGAATAGAAGTCATTGGATGCTCTAGTGACGGTGGACGTGTTTTTCAT
genomic: CTATCACACTTGTCCCTAAGTCCATTTCTGGTTGGCGAAGTTGATAGCATgtgagtttaa ... actggtgtagGCATGAATAGAAGTCATTGGATGCTCTAGTGACGGTGGACGTGTTTTTCAT
EST: gi|161718282|gb|FC066033.1|FC066033
EST:     CTATCACACTTGTCCCTAAGTCCATTTCTGGTTGGCGAAGTTGATAGCAT                         GCATGAATAGAAGTCATTGGATGCTCTAGTGACGGTGGACGTGTTTTTCAT
genomic: CTATCACACTTGTCCCTAAGTCCATTTCTGGTTGGCGAAGTTGATAGCATgtgagtttaa ... actggtgtagGCATGAATAGAAGTCATTGGATGCTCTAGTGACGGTGGACGTGTTTTTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attacacattgaaaataaatttgaacggggataattgattgttatactggtgtagGCATGAATAGAAGTCATTGGATGCTCTAGTGACGGTGGACGTGTTTTTCATTACCTCGGATAAGTTGATGGCTCATAGATGTGCAGTATGGGTAGTTCCC
                                aattgat  putative branch site (score: 4)
       attgaaaataaatttg  TA-rich tract