Sequence
atgc intronic sequence ATGC exonic sequence...tattttgaataaactagatgtgcaatgtatatttgtttcttttgtatgtttttcacaaatgatactgtagcatcaatgtatttctttcctttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os12g40490.1 (Oryza sativa), 3'ss of exon 8
-tattttgaataaactagatgtgcaatgtatatttgtttctttt-gtatgtttttcacaaatgatactgtagcatcaatgtatttctttcctttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTT
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gtaagt-gaatgaattccatgctcagaatgtgcatggacgtgttagttggagttacattcctgat-ctgtcttgaattgagactgttgcatttcatacacagATTCCAACGAACAGGAATGGGCTGATCGAATACCGAGCACATCCATTCTGGATGCAAAAGTACTGTCCTTCCCATGAAGATGATGGCACTCCTAGGTGTT
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os06g08400.1 (Oryza sativa), 3'ss of exon 6
--tattttgaataaactagatgtgcaatgtatattt-gtttcttttgtatgtttttcacaaatgatactgtagcatcaatgtatttctttcctttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTT
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aataattgacatgtgaaagttgt-taacatgtgttaagtaacagccgacaatttctttttgtttttttaaatgcgccatcttacag--ttccttcttattcagATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCT
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G099328_T04 (Zea mays), 3'ss of exon 7
--tattttgaataaactagatgtgca---atgtatatttgt-ttcttttgtatgtttttcacaaatgatactgtagcatcaatgtatttctttcctttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTT
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gtaagtgccgacaatccaagtttatggatacgcatgaaggtattgatcagaatatatttctgatccgtctgtataactgcaat---tattatgtcttcttccccagATTCCAACAAATAGAGATGGCCTCATTGAATACCGAGCACATCCTTTCTGGATGCAGAAGTACTGTCCTTCCCATGAAGATGATGGCACTCCTCGGTGCT
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G19010.1 (Glycine max), 3'ss of exon 5
--tattttgaataaactagatgtgcaatgtatatttgtttcttttgtatgtttt--tcacaaatgatactgtagcatcaatgtatttctttcctttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTT
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ccttttttgaattag--aattgtccactttat-tttgttctttcaactttttctagttatagat-ataaagtacaattgaatgattgatttttgttcattgcagATTCCACCAAATTCAGCTGGTCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTT
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G06720.2 (Glycine max), 3'ss of exon 6
-tattttgaataaactagatgtgcaatgtatatttgtttcttttgtatgtttt--tcacaaatgatactgtagcatcaatgtatttctttcctttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTT
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cttttttgaatttag-aattgcccactttat-tttgttctttcaattttttctagttatagat-ataaagtacaattgaatgattgatttttgttcattgcagATTCCACCAAATTCAGCTGGTCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTT
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G38640.3 (Glycine max), 3'ss of exon 3
tattttgaataaactagatgtgcaatgtatatttgtttcttttgtatgtttttca-caaatgatactgtagcatcaa-tgtatttctt--tcctttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTT
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----cttcatagaacaaaccttaagtttgccttttcaaaaaagaaaaaaatggcagtaagatacattgttcagtaaactagaattattggttctttccttgtagATCCCAACTAATTCATCTGGTCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTCCTCGTTGTT
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G25750.1 (Glycine max), 3'ss of exon 6
--tattttgaataaactagatgtgcaatgtatatttgtttcttttgtatgtttttcacaaatgatactgtagcatcaatgtatttctttcctttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTT
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tcctttttgaatta-caaattgtccgctttattttgttctttcaattttgctagttatagat-atacagcgcaattgaatgatcaatttttgttcaattcagATCCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCGACAAAAATATTGTCCATCGCATGAGGGTGATGGTACTCCTCGTTGTT
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G06650.2 (Glycine max), 3'ss of exon 2
tattttgaataaactagatgtgcaatgtatatttgtttcttttgtatgtttttca-caaatgatactgtagcatcaa-tgtatttctt--tcctttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTT
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---tcttcatgaac-agaccttaagtttgcgttttttttttaaaaaaaaatggcagtaagatatattgttcagtaaactagaattattggttctttccttgtagATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTTCTCGTTGTT
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 3'ss of exon 6
tattttgaataaactagatgtgcaatgtatatttgtttcttttgtatgtttttcacaaatgatactg----tagcatcaatgtatttctttcctttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTT
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-gtgagtgatagccaacttctgttg-atctctatattttacccaaaatttgttcccaggttgtactaagcttaatgtgtatgtataaatgtaactcctcta--gATTCCGACAAATCCAGCTGGTCTTATTGAGTATAGGGCACATCCCTTTTGGATGCAAAAGTATTGTCCTTCACATGAGCGTGATGGAACTCCTCGGTGTT
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S395_19V6.1 (Physcomitrella patens), 3'ss of exon 3
tattttgaataaactagatgtgca-atgtatatttgt-ttcttttgtatgtttttcacaaatgatactgtagcatcaatgtatttctttcctttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTT
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gatgatggt--atctggcgatgcggatagacgctcctgctcttcagcattttaggcttgttgtctagtgccacatcacaatgacttccgttttcattcgcagATCCCAACAAATCCAGCTGGACTTATAGAATACCGATCACATCCATTCTGGAATCAAAAGTACTGTCCAAGACATGAGAGAGATGGCACACCTCGTTGCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110720145|gb|EE095821.1|EE095821EST: CATGCTACAAGGAACAAAATCATCCAAAATGTGATGTTTGCAGGAACTTT ATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGG
genomic: CATGCTACAAGGAACAAAATCATCCAAAATGTGATGTTTGCAGGAACTTTgtaagtgtca ... ttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGG
EST:
gi|46917879|gb|CN547208.1|CN547208EST: CATGCTACAAGGAACAAAATCATCCAAAATGTGATGTTTGCAGGAACTTT ATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGG
genomic: CATGCTACAAGGAACAAAATCATCCAAAATGTGATGTTTGCAGGAACTTTgtaagtgtca ... ttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtttttcacaaatgatactgtagcatcaatgtatttctttcctttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTT
tgtatttctttccttt CT-rich tract
aatgtattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattttgaataaactagatgtgcaatgtatatttgtttcttttgtatgtttttcacaaatgatactgtagcatcaatgtatttctttcctttttgtacagATTCCAACAAATGCAGCTGGACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - gaataaa
- - - - - - - - - - - caatgta
- - - - - - - - - - - - - - - - - - - - - tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatcaa