Sequence
atgc intronic sequence ATGC exonic sequence...tcccccaaccttactcttgcctttaattatgtctctccaataaaatgattaatgtaagaagaatatctaaatctctgttttttatccctggttcttgcagATTGACCTTAGGCGAGCATATAACTGTGAAATCATGCTTACAAAAGTTAAGATGCCATTGCCTGATTTGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g06530.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G33930.1 (Glycine max), 3'ss of exon 5
tcccccaaccttactcttgcctttaattatgtctctccaataaaatgattaatgtaagaagaatatctaaatctctgttttttatccctggtt--cttgcagATTGACCTTAGGCGAGCATATAACTGTGAAATCATGCTTACAAAAGTTAAGATGCCATTGCCTGATTTGATG
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-attaaggcttaagttcttcatttaattct-tgtcaagattcaagagtcaagacattttatagaatttgagttcttgataaaagattcatgttaccttgcagATTGAGCTCAGGCGGGCATATAACTGTGAGATCATGCTTACAAAAGTCAAAATCCCTTTGCCTGATCTGATG
upper sequence: Vv04s0008g06530.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G25050.2 (Arabidopsis thaliana), 3'ss of exon 5
----------------------------tcccccaa---ccttactcttgcctttaattatgtctctcca-ataaaatgattaatgtaagaagaatatctaaatctctgttttttatccctggtt------cttgcagATTGACCTTAGGCGAGCATATAACTGTGAAATCATGCTTACAAAAGTTAAGATGCCATTGCCTGATTTGATG
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gtaattgattgcaatgaacattctactgttccctaatttcttaagtcttttaatttgcgaagtttcacagcatgaaattaa-gatccattgacagttactctattttcgtcctctaactttgtctattagttttgcagATTGAGCTCAGACGAGCATACAACTGTGAGATCATGCTCTCTAAAGTTAAAATACCTTTGCCTGATTTGATG
upper sequence: Vv04s0008g06530.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G32400.1 (Arabidopsis thaliana), 3'ss of exon 4
----------------------------tcccccaa---ccttactcttgcctttaattatgtctctcca-ataaaatgattaatgtaagaagaatatctaaatctctgttttttatccctggtt------cttgcagATTGACCTTAGGCGAGCATATAACTGTGAAATCATGCTTACAAAAGTTAAGATGCCATTGCCTGATTTGATG
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gtaattgatagcaatgagcattctactgttccctagtttcttaagtcttttaatttgcgaagtttcacagcatgaaattaa-gatccattgacagttactctattttcgtcctctaactttgtctattagttttgcagATTGAGCTCAAACGAGCATACAACTGTGAGATCATGCTCTCTAAAGTTAAAATACCTCTGCCTGATTTGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattaatgtaagaagaatatctaaatctctgttttttatccctggttcttgcagATTGACCTTAGGCGAGCATATAACTGTGAAATCATGCTTACAAAAGTTAAGATGCCATTGCCTGATTTGATG
atctaaa putative branch site (score: 3)
ttcttgc putative PPT
aagaatatctaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcccccaaccttactcttgcctttaattatgtctctccaataaaatgattaatgtaagaagaatatctaaatctctgttttttatccctggttcttgcagATTGACCTTAGGCGAGCATATAACTGTGAAATCATGCTTACAAAAGTTAAGATGCCATTGCCTGATTTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
tccccca
- - - - - - - -cttgcct
- - - - - - - - - - - - - - - - ctctcca
- - - - - - - - - - - - - - - - - - - - -aaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agaagaa