Sequence
atgc intronic sequence ATGC exonic sequence...tgtaaaacacactggagtgattcaaattccgtatggaatgtttaaacactttatggagctcaatttctcaatttttttatattcctttcgtgggttgcagGTATTTGCAGGATTTGTAATCGCTAATCTATCAGATTGGTTTTCAAAGAAGTTGGGATTGTAGCATTTCATTTGATCATTGTTGCTGAATATAGCAATTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g06500.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G06930.2 (Glycine max), 3'ss of exon 5
tgtaaaacacactggagtgattcaaattccgtatggaatgtttaaacactttatggagctcaatttct-----caatttttttatattcctttcg----tgggttgcagGTATTTGCAGGATTTGTAATCGCTAATCTATCAGATTGGTTTTCAAAGAAGTTGGGATTGTAGCATTTCATTTGATCATTGTTGCTGAATATAGCAATTA--
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-------agaactgggaaattttgtccaccg-atgtactaactattgactg-atggagacgaatcattttcaacaatgttcacatattaatgttggaattgatctgcagGTATTTGCAGGGTTTGTAATTGCTAATCTATCAGATCGGTTGACGAAGATGTTGAGATTGTAGCATATTGTTT--TCTATATTAATTTTTTCCACAATTGAT
upper sequence: Vv04s0008g06500.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G07010.1 (Glycine max), 3'ss of exon 7
tgtaaaacacactggagtgattcaaattccgtatggaatgtttaaacactttatggagctcaatttctcaatt--tttttatattcctttcg---tgggttgcagGTATTTGCAGGATTTGTAATCGCTAATCTATCAGATTGGTTTTCAAAGAAGTTGGGATTGTAGCATTTCATTTGATCATTGTTGCTGAATATAGCAATTA--
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--aagagctgtttttatttataaaaaaactg-atggaaa--caaatcattttcaacaattttgttcacatattaatgttggaattggtatggaattgagctgcagGTATTTGCAGGCTTTGTAATAGCTAATCTTTCAGATCGGTTGACGAAGATGTTGGGATTGTAGCATATTGTTT--TCTATATTAATTTTTTTCACAATTGAT
upper sequence: Vv04s0008g06500.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G32140.1 (Arabidopsis thaliana), 3'ss of exon 7
tgtaaaacacactggagtgattcaaattccgtatggaatgtttaaacactttatggagctcaatttctcaatttttttatattcctttcgtgggttgcagGTATTTGCAGGATTTGTAATCGCTAATCTATCAGATTGGTTTTCAAAGAAGTTGGGATTGTAGCA--TTTCATTTGATCATTGTTGCTGAATATAGCAATTA
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-gtaactaaaacttatat--tccatcaacaacagagaatgaataatt-tttcctgatgctcaagaattagcatttggtttatt-----------ttgcagGTGTTTGCTGGATTCGTAATAGCTAACATATCGGATTTGTTCTCAAAGAAGCTTGGATTGTAGCACATATGATTCTTTTTTTTTGGTTGTTTTGTGGTAT-- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acactttatggagctcaatttctcaatttttttatattcctttcgtgggttgcagGTATTTGCAGGATTTGTAATCGCTAATCTATCAGATTGGTTTTCAAAGAAGTTGGGATTGTAGCATTTCATTTGATCATTGTTGCTGAATATAGCAATTA
ttcctttcgt CT-rich tract
aatttctcaatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtaaaacacactggagtgattcaaattccgtatggaatgtttaaacactttatggagctcaatttctcaatttttttatattcctttcgtgggttgcagGTATTTGCAGGATTTGTAATCGCTAATCTATCAGATTGGTTTTCAAAGAAGTTGGGATTGTAGCATTTCATTTGATCATTGTTGCTGAATATAGCAATTA
-gtaaaac
- - - - -cactgga
- - - - - - - - - - - - - - ccgtatg
- - - - - - - - - - - - - - - - - - - - - taaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - -tggagct