Sequence
atgc intronic sequence ATGC exonic sequencegtagggtttttgttttgatctatttataaagaatattagttcttggtattctgtattctttccttagtagatgatgtagatcatttgctttcttttatggtgttacagATGGTTTAATTAGTCTTCTTGAAAGCCGCCGTGGTCAAGATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G32180.1 (Glycine max), 3'ss of exon 8
gtagggtttttgttttgatctatttataaagaatattagttcttggtattctgtattctttccttagtagatgatgtagatcatttgctttct-tttatggtgttacagATGGTTTAATTAGTCTTCTTGAAAGCCGCCGTGGTCAAGATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGC
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gtaaagattgcttatatatatatatattcttatttaggagttttgttgaaaactattttttccccaatgtcaagttgagacattctttattctgttcactggcctgcagAGGGTTTAATTGAACTTCTTGACCGTCGCCGTGGTCAGGATGGGGCATATGTTGGATGCATGAAGTCAGGAGAAGTGATATCAGAAGA
upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G14000.2 (Glycine max), 3'ss of exon 7
-------------------------------------gtagggtttttgttttgatctattt-ataaagaatattagttcttggtattctgtattctttccttagtagatgatgtagatcatttgctttcttttatggtgttacagATGGTTTAATTAGTCTTCTTGAAAGCCGCCGTGGTCAAGATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGC
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gtaaagattgcttatatatataattatatatatatatatatattttttttttttcttttttttatttaggagatt--ttgttgaaaaactatttttccccaatgttaaa-gtgatacattctttattctgttcactggc-ctgcagAGGGTTTAATTGAACTTCTTGACCGTCGTCGTGGTCAGGATGGGGCATATGTTGGATGCATGAAGTCAGGAGAAGTGATATCAGAAGA
upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G32120.1 (Arabidopsis thaliana), 3'ss of exon 7
gtagggtttttgttttgatctatttataaagaatattagttcttggtattctgtattctttccttagtagatgatgtagatcatttgctttcttttatggtgttacagATGGTTTAATTAGTCTTCTTGAAAGCCGCCGTGGTCAAGATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGC
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gtagtacttcctctttcatctctttgtcttgcaaagctatgtttgatccaat-cagggtatc-------aacgatgtctttgagtaacaaatgttttcggtctaacagAGGGGATGATTGCGCTTCTTGAAAGTCGTCGTAGTCAAGATGGTGCTTACATTGGGTGCATGAAATCTGGAGATGTGATTACTGAAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351029617|gb|FQ427457.1|FQ427457EST: GGATGCAGAATTTTATGTGAAAGTTGATGACGAGATATACCTTGATCTTG ATGGTTTAATTAGTCTTCTTGAAAGCCGCCGTGGTCAAGATAGCGCTTATA
genomic: GGATGCAGAATTTTATGTGAAAGTTGATGACAAGATAGACCTTGATCTTGgtagggtttt ... ggtgttacagATGGTTTAATTAGTCTTCTTGAAAGCCGCCGTGGTCAAGATAGCGCTTATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattctttccttagtagatgatgtagatcatttgctttcttttatggtgttacagATGGTTTAATTAGTCTTCTTGAAAGCCGCCGTGGTCAAGATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGC
tttcttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagggtttttgttttgatctatttataaagaatattagttcttggtattctgtattctttccttagtagatgatgtagatcatttgctttcttttatggtgttacagATGGTTTAATTAGTCTTCTTGAAAGCCGCCGTGGTCAAGATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC