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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttatttactagattgttacagcatttggttttcttcaatggatgtttgtcagattgttctcaatttggttttatttgtttggtacatgaagaaattctcatctgcatgaaactgttcatttttgaaatcatttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAGGATAGAAAGTGTTGGTGATGAGGAAGGGATACCGACTGCAACAGTGAAA

Basic information

species Vitis vinifera
transcript Vv04s0008g05090.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687168|gb|EE064342.1|EE064342
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
EST: gi|34544006|gb|CF512238.1|CF512238
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
EST: gi|30295674|gb|CB972468.1|CB972468
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTG
EST: gi|352777331|gb|FQ473965.1|FQ473965
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
EST: gi|34543917|gb|CF512149.1|CF512149
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
EST: gi|34550009|gb|CF518241.1|CF518241
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAGGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
EST: gi|34550884|gb|CF519098.1|CF519098
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAGGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
EST: gi|352765311|gb|FQ466008.1|FQ466008
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAAGTATTTGCAAAGCTTGTACAAGGACCTGAAGTTTTGAAGA
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTA-GTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGA
EST: gi|26262030|gb|CA813093.1|CA813093
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGT
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGT
EST: gi|352772302|gb|FQ469827.1|FQ469827
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAGGTATGGAGTATTTTGGAAAGCTTGTACAAGGACATGAAGTATTGAAGA
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTT-GGAAAGCTTGTACAAGGACATGAAGTTTTGAAGA
EST: gi|110723917|gb|EE099287.1|EE099287
EST:     GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAG                         GAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG
genomic: GTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGgtttgtttat ... atttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgaagaaattctcatctgcatgaaactgttcatttttgaaatcatttaaacagGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAGGATAGAAAGTGTTGGTGATGAGGAAGGGATACCGACTGCAACAGTGAAA
                              ttcatttttgaaatca  TA-rich tract