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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttatgattataaattcgatattcattctgatatggcatttttttttatcaactgcaaaggtgaagcacatgctgatttttttttttcttttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG

Basic information

species Vitis vinifera
transcript Vv04s0008g04690.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os06g39870.1 (Oryza sativa), 3'ss of exon 5
---agttatgattataaattcgatattcattctgatatggcatttttttttatcaactgcaaaggtgaagcacatgctgattttttt---ttttcttttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG
   |||    || |    ||   | ||  | |    |    | ||  |  ||     |       | |      |  | | ||  |    | || || |  | ||||||||||||||||| ||||| || || ||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |
gtaagtggcaatcacttcttttttttttctgcaagcagcagagttcatgctacttcatctcgtcatcagttctttagttacttaatcgcatctttttctcctgcagTCCCGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATTGCAGAGAAGATGAATGGGGCATCTGGAG

upper sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 7
---agttatgattataaattcgatattcattctgatatggcatttttttttatcaactgcaaaggtgaagcacatgctgatttttttttttcttttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG
   |||  |||| |   | |  |||||  || || ||     ||||   | ||    ||    | ||| || |             || |  |||  |||||||| ||||||||||| ||||| || || ||||||||||||||||| |||||||| ||||||||||| ||||| || || ||||||||||| || || || |
gtaagtgctgataacttactgtatattgtttgtgttaat---ttttccatgatttcttgtgttgatgatgcgc-------------ttatcttttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTGGTATTGATCTGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAG

upper sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G107362_T04 (Zea mays), 3'ss of exon 7
agttatgattataaattcgat--attcattctgatatggcatttttttttatcaactgcaaaggtgaagcacatgctgatttttttttttcttttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG
           ||  || |    | |||| ||| |||  |  ||  |||||   |  || |  |      ||| |  | ||  | |||| |  ||    ||||| || || ||||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||| ||||| || || ||||||||||| || || || |
----------gtatgtttggctaactcatcctgttatacctgttgattttac--atggctactgctgctgacagggcgcttaatcttttgcccttg---cagTCACGTTTCGATATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAG

upper sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 7
agttatgattataaattcgat--attcattctgatatggcatttttttttatcaactgcaaaggtgaagcacatgctgatttttttttttcttttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG
           ||  ||||    | |||| ||| |||  || ||  | ||||  |  || |         ||| | || ||    ||||||   |    ||||| || || |||||| |||| ||||| ||||| ||||||||||| |||||||| || |||||||| ||||| ||||| ||||||||||| || || || |
----------gtatgttcggctaactcatcctgttataccagttgatcttat--atggctactcctgctgacagggtgcttaacctttttcccctg---cagTCACGTTTCGATATTCTGAAGATCCATTCAAGGAAAATGAACTTGATGCGTGGTATCGATCTGAAAAAGATCGCAGAAAAGATGAATGGGGCCTCAGGAG

upper sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 7
------agttatgattataaattcgatattcat-----tctgatatggcatttttttttatcaactgcaaaggtgaagca-catgctgatttttttttttcttttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG
      | || || ||  |   |   |||| ||     | |  |  |  |      |  | |   ||||    | ||  |  || |       |   | | | ||| | ||||| ||  | ||||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||
gtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaagatgcacctggtgcattcctaaaaaagtattcctgaaaatggctatttatttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG

upper sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G00420.1 (Glycine max), 3'ss of exon 7
--------------agttatgattataaattcgatattcattctgatatggcatttttttttatcaactgcaaaggtgaagcacatgctgatttttttttttcttttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG
                | ||| |    | |   |||||  | |||  |    |  |     |      | || |    ||  |  | ||||   |   | ||  |||| | ||||| ||  | ||||||||||||||||| || |||| |||||| ||||||||||| |||||| |||||||||| || |||||||||||||| ||||||||||
gtttgcatttttgctttcatgctacccattaatatatttgtactgggagaaaagatgcacctggtgcattcataaa-aaaatat-tcctgaaaatgagtatt--ttttatgcagTCTCGGCTGGATATTTTGAAAATCCATTCTAGAAGAATGAATTTAATGCGTGGCATTGATTTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTG

upper sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G20000.1 (Arabidopsis thaliana), 3'ss of exon 7
-----------------------------------------------------------------------agttatgattataaattcgatattcattctg-atatggcatttttttttatcaactgca---aaggtgaagcacat-------gctgattttttttttt--cttttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG
                                                                        ||| |  ||   ||      ||| | |  | | |   | ||| |   ||   | || |   || |||| |||          ||| || | | ||| |    | | || ||||| || |||||||| ||||| || |||||||| |||||||| || |||||||| || |||||||| ||||| |||||||||||||||||||| || ||||
gtaatgcttgtgtttcttaggacatgatattagaaataactttaaacttgaagtagcaactttgctcactccgttgtttttggtaaactatcatttactgcgtaaaatacttttctccatacttattgtacccaaagtgaggcaggacggtttggctaatgtatatttctaatatgtgttgcagTCACGTTTTGATATCTTGAAGATACACTCAAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTG

upper sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G19990.1 (Arabidopsis thaliana), 3'ss of exon 7
---------------------------------------------------------------------------------------------agttatgattataaattcgatattcattctgatatg---gcatttttttttatcaactgcaaaggtgaagcacatgctgatttttttttttct--tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG
                                                                                                ||| |||   |     | |  | ||    |||      | |  ||||  |||| ||     |    |     ||| || | | |||      | | || ||||| || ||||| || ||||| || ||||| || |||||||| || |||||||| || |||||||| ||||| ||||||||||||||||| || || ||||
gtaatacttgtgctctgagaaaatgatattgactgttgtttttggtgatatgaatacattattcgtcaaagtaggcaccttatttagtatttagactatcatttgcagcataaaaaacttttctttatctccatactcattttactcaagtgaggcaggacggtttg-gctaatgtatgtttccaaaatgtgttgcagTCACGTTTTGACATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGCGCTTCAGGTG

upper sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S245_17V6.1 (Physcomitrella patens), 3'ss of exon 7
---------------agttatgattataaattcgatat--------tcattctgatatggcatttttttttatcaactgcaaaggtgaagcacatgctgattttttt--ttttcttttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG
               | |||| |||    |||   | |        |   |||       | || || ||| ||  |  |    ||   |     ||| || | | |  ||  ||| ||   ||||| || || || ||  | ||||| || ||||| || |||||||||||||| || |||||| |||||||||| || || ||||||   || |||||||| |
gtatacaaaggcgtgatttataatttgccatttcctctctcccaccttgctctctcgctcctttcttatttttcttcgccccttgtcttgtgtgagctaatctatatgattgccttgttacgcagTCTCGATTGGACATCCTTAAAATTCATTCAAGGAAGATGAACTTAATGCGAGGTATTGATTTGAAGAAGATTGCTGAAAAGATGGGAGGCGCATCTGGAG

upper sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ04162 (Selaginella moellendorffii), 3'ss of exon 5
agttatgattataaattcgatattcattctgatatggcatttttttttatcaactgcaaaggtgaagcacatgctgatttttttttttctt-ttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG
                                                    | | |   |          || |  ||  |      ||  ||||| ||||||||  | |||||  | || ||||| ||  | || |||||  ||||||| ||||| || ||||||||||| || ||||||||||| ||||| || || |
--------------------------------------------------gtatttcctggtccttttttctgttctttcctcacgcgctcgtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGGGGATCGACCTGAAGAAGATCGCCGAGAAGATGAACGGTGCCTCGGGAG

upper sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ20576 (Selaginella moellendorffii), 3'ss of exon 6
agttatgattataaattcgatattcattctgatatggcatttttttttatcaactgcaaaggtgaagcacatgctgatttttttttttctt-ttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG
                                                   |  | |              || |  ||  |      ||  ||||| ||||||||  | |||||  | || ||||| ||  | || |||||  ||||||| ||||| || ||||||||||| || ||||||||||| ||||| || || |
-------------------------------------------------gtatttcctggtcctttttttctgttctttcctcacgcgctcgtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGGGGATCGACCTGAAGAAGATCGCCGAGAAGATGAACGGTGCCTCGGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110693738|gb|EE070234.1|EE070234
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|83275357|gb|DV939365.1|DV939365
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCTAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|110369927|gb|EC934100.1|EC934100
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|110393851|gb|EC959383.1|EC959383
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|110716592|gb|EE091708.1|EE091708
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|110365053|gb|EC928767.1|EC928767
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|254914891|gb|GR906992.1|GR906992
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|110413978|gb|EC979798.1|EC979798
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|56409639|gb|CX017891.1|CX017891
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|83275019|gb|DV939115.1|DV939115
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|110399099|gb|EC965589.1|EC965589
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|56409619|gb|CX017871.1|CX017871
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|22011936|gb|BQ796970.1|BQ796970
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|110428082|gb|EC994543.1|EC994543
EST:     GGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|110391091|gb|EC956045.1|EC956045
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|110403181|gb|EC964466.1|EC964466
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|349826120|gb|FQ415925.1|FQ415925
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|30302866|gb|CB979660.1|CB979660
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|110686251|gb|EE063682.1|EE063682
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|110703733|gb|EE080835.1|EE080835
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|110724539|gb|EE100454.1|EE100454
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|110414055|gb|EC979878.1|EC979878
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT
EST: gi|30302923|gb|CB979717.1|CB979717
EST:     GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG                         TCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGC
genomic: GGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAGgtatatttct ... tttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatcaactgcaaaggtgaagcacatgctgatttttttttttcttttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG
                          tgctgat  putative branch site (score: 3)
                        catgctgatttttttt  CT-rich tract
                         atgctgattttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agttatgattataaattcgatattcattctgatatggcatttttttttatcaactgcaaaggtgaagcacatgctgatttttttttttcttttttttcagTCCCGCTTTGATATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - cattctg
- - - - - - - - - - - - - - - - tatggca
- - - - - - - - - - - - - - - - - - - - - - - - - caactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacatg