Sequence
atgc intronic sequence ATGC exonic sequence...tttacaaattaaatcagaagttgagaatttctatgtttttgaagtttaaacagttgtcattggggttattttttcattttttatcttcttactctttcagGGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATGACTTGCAGCGATTACTAGCCAAACACGAAGCTATTGCTTCAGGAACTCCTGTTCCAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g03720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G26440.2 (Glycine max), 3'ss of exon 7
-------------------------------------------------------tttacaaattaaatcagaagttgagaatttcta----tgtttttgaagtttaaacagttgtcattggggttattttttcattttttatcttcttactctttcagGGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATGACTTGCAGCGATTACTAGCCAAACACGAAGCTATTGCTTCAGGAACTCCTGTTCCAAAA
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gtaaggcctggaatccctttccatgatattatataatgatgactgagtacaatattttactcattgtttcgtgttcattgtatttttagtaaaatgtattatttttatccaaacaatatagtagttattattatggtcttttccgtca-atttttccagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCGTGTACTGGCCAAGCACGAATCTATTTCTTCTGGAATTTCTACCAAAAAC
upper sequence: Vv04s0008g03720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G21360.1 (Glycine max), 3'ss of exon 1
---------------------------------------------tttacaa----attaaatcagaagttgagaatttctatgtttttga-agtttaaacagttgtcattggggttat-------tttttcattttttatcttcttactctttcagGGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATGACTTGCAGCGATTACTAGCCAAACACGAAGCTATTGCTTCAGGAACTCCTGTTCCAAAA
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gtaaggcctggaatccctttccatgatataatataatgatgactgcgtacaatatttttaactgcttggttcatgttcattgtatttttaataaaatgtattctttttatccaaacaatataacagttattattatggtcttttctgtctattctagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCGTGTACTGGCTAAGCACGAATCTATTTCTTCTGGAACTTCTACCAAAAAT
upper sequence: Vv04s0008g03720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G32760.1 (Arabidopsis thaliana), 3'ss of exon 7
-------tttacaaattaaatcagaagttgagaatttctatgtttttgaagtttaaacagttgtcattggggttattttttcattttttatcttcttactctttcagGGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATGACTTGCAGCGATTACTAGCCAAACACGAAGCTATTGCTTCAGGAACTCCTGTTCCAAAA
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tcagatagtatcgtgtggaataatacagttagaattgctattatgcttcagaccttatgtttct--ttgtactc--ttctttacctcgcaactttgt---ttttcagGGACGAGTCTTTGTTATGTCAAGGTCTGGCTTTGAATGATGACTTGCAGCGTGTCTTAACCAATTATGAAGCAATTGCTTCTGGATTACCTGGAACTTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33406474|gb|CF212101.1|CF212101EST: CAGTGTCGGACATACAAGCAAAGAGTGGTCCACCTTGTCAACTCAACTGC GGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATGACTTGCAGCG
genomic: CAGTGTCGGACATACAAGCAAAGAGTGGTCCACCTTGTCAACTCAACTGCgtgaggcctc ... actctttcagGGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATGACTTGCAGCG
EST:
gi|18459792|gb|BM438070.1|BM438070EST: AGTGTCGGACATACAAGNCAA-GAGTGGTCCACCTTGTCAACTCAACTGC GGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATG
genomic: AGTGTCGGACATACAAG-CAAAGAGTGGTCCACCTTGTCAACTCAACTGCgtgaggcctc ... actctttcagGGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaaacagttgtcattggggttattttttcattttttatcttcttactctttcagGGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATGACTTGCAGCGATTACTAGCCAAACACGAAGCTATTGCTTCAGGAACTCCTGTTCCAAAA
ttcttac putative branch site (score: 2)
ttattttttcattttt CT-rich tract
ttattttttcattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttacaaattaaatcagaagttgagaatttctatgtttttgaagtttaaacagttgtcattggggttattttttcattttttatcttcttactctttcagGGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATGACTTGCAGCGATTACTAGCCAAACACGAAGCTATTGCTTCAGGAACTCCTGTTCCAAAA
- - -aaattaa
- - - - - - - - - - - - - - - - - - - - - - - -aaacagt