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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcttgcttcagtaacctgagctaaaatgaaaactttcagcaacttgcatcagttgtgaaatcaaccccattgtatttgttgtgactcttcacttattttctccttaattttttattgaagttccttttgcttgattttaggtggtgttagtaatttctcctgtttctgtttagcagTTACTCAAACAAAAATTTATCTTTTGGAATAGTTGATCTTGGCCTCTTCCCAAATGTGGCAGAAAAATTTGGAATATCTGTTGGTG

Basic information

species Vitis vinifera
transcript Vv04s0008g03260.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g03260.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G26900.3 (Glycine max), 3'ss of exon 7
gtatgtttcttgcttcagtaacctgagctaaaatgaaaactttcagcaacttgcatcagttgtgaaatcaaccccattgtatttgttgtgactcttcacttatttt-ctccttaattttttattgaagttccttttgct---tgattttaggtggtgttagtaatttctcctgtttctgtttagcagTTACTCAAACAAAAATTTATCTTTTGGAATAGTTGATCTTGGCCTCTTCCCAAATGTGGCAGAAAAATTTGGAATATCTGTTGGTG
                                                                                 |||| || ||      |  |||  | |  |   | ||   ||  ||  |  || || |       ||| |    | |  |||| |||   ||| ||      |||| || |||| |||||||||||| |||||||||||||||||||| ||||| || ||||  || |||| ||||||||||||| |  |||
---------------------------------------------------------------------------------tttggtgagaaagaatagctatcctgcatcagcaattcccatgaaaaattgttgtgataagcagcttttgacaatttccgtaaattca--tgtctcct----gcagATATTCAAGCAAAAATTTATCATTTGGAATAGTTGATCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349823503|gb|FQ414913.1|FQ414913
EST:     TCGCCCACTTGCATTCGCACAAGCTTGTTCTTTCCTGATCTCTCAATTAC                         TTACTCAAACAAAAATTTATCTTTTGGAATAGTTGATCTTGGCCTCTTCCC
genomic: TCGCCCACTTGCATTCGCACAAGCTTGTTCTTTCCTGATCTCTCAATTACgtatgtttct ... tgtttagcagTTACTCAAACAAAAATTTATCTTTTGGAATAGTTGATCTTGGCCTCTTCCC
EST: gi|351013864|gb|FQ434016.1|FQ434016
EST:     TCGCCCACTTGCATTCGCACAAGCTTGTTCTTTCCTGATCTCTCAATTAC                         TTACTCAAACAAAAATTTATCTTTTGGAATAGTTGATCTTGGCCTCTTCCC
genomic: TCGCCCACTTGCATTCGCACAAGCTTGTTCTTTCCTGATCTCTCAATTACgtatgtttct ... tgtttagcagTTACTCAAACAAAAATTTATCTTTTGGAATAGTTGATCTTGGCCTCTTCCC
EST: gi|351031315|gb|FQ445340.1|FQ445340
EST:     TCGCCCACTTGCATTCGCACAAGCTTGTTCTTTCCTGATCTCTCAATTAC                         TTACTCAAACAAAAATTTATCTTTTGGAATAGTTGATCTTGGCCTCTTCCC
genomic: TCGCCCACTTGCATTCGCACAAGCTTGTTCTTTCCTGATCTCTCAATTACgtatgtttct ... tgtttagcagTTACTCAAACAAAAATTTATCTTTTGGAATAGTTGATCTTGGCCTCTTCCC
EST: gi|351045014|gb|FQ449268.1|FQ449268
EST:     TCGCCCACTTGCATTCGCACAAGCTTGTTCTTTCCTGATCTCTCAATTAC                         TTACTCAAACAAAAATTTATCTTTTGGAATAGTTGATCTTGGCCTCTTCCC
genomic: TCGCCCACTTGCATTCGCACAAGCTTGTTCTTTCCTGATCTCTCAATTACgtatgtttct ... tgtttagcagTTACTCAAACAAAAATTTATCTTTTGGAATAGTTGATCTTGGCCTCTTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttttgcttgattttaggtggtgttagtaatttctcctgtttctgtttagcagTTACTCAAACAAAAATTTATCTTTTGGAATAGTTGATCTTGGCCTCTTCCCAAATGTGGCAGAAAAATTTGGAATATCTGTTGGTG
       gcttgat  putative branch site (score: 5)
                                tttctcctgtttctgt  putative PPT
                         ttagtaattt  TA-rich tract