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...agatgcactcatgaacaaagttttatgaatatgtggccatgttgtaagaccttatgaagattctcatgttttttatgcatttttttcttctgtaatttagGTACACCAATTAAAACAGATTCTACCCACATTGGACAAAAACTATGCTGCTCGTGATAAGAAGGATACAT
species | Vitis vinifera |
transcript | Vv04s0008g03180.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTGGCTGTGCTACAAG GTACACCAATTAAAACAGATTCTACCCACATTGGACAAAAACTATGCTGCTEST: gi|71856752|gb|DT005807.1|DT005807
genomic: AGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTGGCTGTGCTATAAGgtctgccttc ... tgtaatttagGTACACCAATTAAAACAGATTCTACCCACATTGGACAAAAACTATGCTGCT
EST: AGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTGGCTGTGCTACAAG GTACACCAATTTAAAACAGATTCTACCCACATTGGACAAAAACTATGCTGCEST: gi|32267964|gb|CD717123.1|CD717123
genomic: AGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTGGCTGTGCTATAAGgtctgccttc ... tgtaatttagGTACACCAATT-AAAACAGATTCTACCCACATTGGACAAAAACTATGCTGC
EST: AGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTGGCTGTGCTACAAG GTACACCAATTAAAACAGATTCTACCCACATTGGACAAAAACTATGCTGCTEST: gi|34417073|gb|CF415827.1|CF415827
genomic: AGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTGGCTGTGCTATAAGgtctgccttc ... tgtaatttagGTACACCAATTAAAACAGATTCTACCCACATTGGACAAAAACTATGCTGCT
EST: AG-TTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTGGCTGTGCTATAAG GTACACCAATTAAAACAGATTCTACCCACATTGGACAAAAACTATGCTGCT
genomic: AGTTTTTTAGGCTGGATGACTCAAAGGTTTTAGCTTGGCTGTGCTATAAGgtctgccttc ... tgtaatttagGTACACCAATTAAAACAGATTCTACCCACATTGGACAAAAACTATGCTGCT
aagaccttatgaagattctcatgttttttatgcatttttttcttctgtaatttagGTACACCAATTAAAACAGATTCTACCCACATTGGACAAAAACTATGCTGCTCGTGATAAGAAGGATACAT
ttttttatgcattttt CT-rich tract
atgttttttatgcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgcactcatgaacaaagttttatgaatatgtggccatgttgtaagaccttatgaagattctcatgttttttatgcatttttttcttctgtaatttagGTACACCAATTAAAACAGATTCTACCCACATTGGACAAAAACTATGCTGCTCGTGATAAGAAGGATACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - -cactcat
- - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - ccatgtt
- - - - - - - - - - - - - - - - - - - - - - - - -ccttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcatg