1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaattattaatcatattttatggtgtcagtgttgtacatttgaaggctaaatgtatcattttctacttctgtgatagacaatatttgtgactgtgttgctcttcttttctcaagTCTTTTCTAACAAATGCACGTGGACATCCGTGTCTATCAAAGCGGCACCAGAAGCTGCTGACTGCATTTTTTAACCATTCAATTCAG
species | Vitis vinifera |
transcript | Vv04s0008g03120.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGGACGATGGTTTGGAGAGCCTGTTAGAGCAGCCCTAATTCATACCAAT TCTTTTCTAACAAATGCACCGTGGACATCCGTGTCEST: gi|71859545|gb|DT008600.1|DT008600
genomic: TTGGACGATGGTTTGGAGAGCCTGTTAGAGCAGCCATAATTCATACCAATgtaattatta ... ttttctcaagTCTTTTCTAACAAATGCAC-GTGGACATCCGTGTC
EST: TTGGACGATGGTTTGGAGAGCCTGTTAGAGCAGCCATAATTCATACCAAT TCTTTTCTAACAAATGCACGTGGACATCCGTGTCTATCAAAGCGGCACCAGEST: gi|71856911|gb|DT005966.1|DT005966
genomic: TTGGACGATGGTTTGGAGAGCCTGTTAGAGCAGCCATAATTCATACCAATgtaattatta ... ttttctcaagTCTTTTCTAACAAATGCACGTGGACATCCGTGTCTATCAAAGCGGCACCAG
EST: TTGGACGATGGTTTGGAGAGCCTGTTAGAGCAGCCATAATTCATACCAAT TCTTTTCTAACAAATGCACGTGGACATCCGTGTCTATCAAAGCGGCACCAGEST: gi|161719348|gb|FC068968.1|FC068968
genomic: TTGGACGATGGTTTGGAGAGCCTGTTAGAGCAGCCATAATTCATACCAATgtaattatta ... ttttctcaagTCTTTTCTAACAAATGCACGTGGACATCCGTGTCTATCAAAGCGGCACCAG
EST: TTGGACGATGGTTTGGAGAGCCTGTTAGAGCAGCCATAATTCATACCAAT TCTTTTCTAACAAATGCACGTGGACATCCGTGTCTATCAAAGCGGCACCAG
genomic: TTGGACGATGGTTTGGAGAGCCTGTTAGAGCAGCCATAATTCATACCAATgtaattatta ... ttttctcaagTCTTTTCTAACAAATGCACGTGGACATCCGTGTCTATCAAAGCGGCACCAG
tttctacttctgtgatagacaatatttgtgactgtgttgctcttcttttctcaagTCTTTTCTAACAAATGCACGTGGACATCCGTGTCTATCAAAGCGGCACCAGAAGCTGCTGACTGCATTTTTTAACCATTCAATTCAG
ctgtgttgctcttctt CT-rich tract
acaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattattaatcatattttatggtgtcagtgttgtacatttgaaggctaaatgtatcattttctacttctgtgatagacaatatttgtgactgtgttgctcttcttttctcaagTCTTTTCTAACAAATGCACGTGGACATCCGTGTCTATCAAAGCGGCACCAGAAGCTGCTGACTGCATTTTTTAACCATTCAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT