Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttaattttccttacgatcttgcacatacctttcttgttcatccctttttaccttcccttttaatttaatcttgaaatttaaaattctggtaaatgtgtggatgactaaaccaaaattttcttctcaacacagATATGGCACTGAATTTTACATACTTCACCGGTATCCTTTGGCTGTTAGGCCATTTTATACCATGCCTTCCTACGATGATCCATTGTACAGTAATTCATTT

Basic information

species Vitis vinifera
transcript Vv04s0008g03010.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g03010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G11710.2 (Glycine max), 3'ss of exon 7
gtaatttaattttccttacgatcttgcacatacctttcttgttcatccctttttaccttcccttttaatttaatcttgaaatttaaaattctggtaaatgtgtggatgactaaaccaaaatt--ttcttctcaacacagATATGGCACTGAATTTTACATACTTCACCGGTATCCTTTGGCTGTTAGGCCATTTTATACCATGCCTTCCTACGATGATCCATTGTACAGTAATTCATTT-----------
                                                          | |||  |  ||| | |   |||| |    || || |   || |  | |   ||| | ||  ||  |  |  |  |   ||||||||||| || || || || ||||||||||| ||||||||||| |||||||| ||||| ||||||| ||||||  ||||    ||||| || || |||           
------------------------------------------------------gtaattcctcatccttttaccactaaatattgtcttttgttg--tgagctgttatttaagctaagtttgatgttattgtatttagatatggcacagAGTTCTATATCCTTCACCGGTACCCTTTGGCTGTAAGGCCATTCTATACAATGCCTTGCTACGACAATCCTGCATACAGCAACTCGTTTGATGTCTTTAT

upper sequence: Vv04s0008g03010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G11710.1 (Glycine max), 3'ss of exon 7
gtaatttaattttccttacgatcttgcacatacctttcttgttcatccctttttaccttcccttttaatttaatcttgaaatttaaaattctggtaaatgtgtggatgactaaaccaaaatt--ttcttctcaacacagATATGGCACTGAATTTTACATACTTCACCGGTATCCTTTGGCTGTTAGGCCATTTTATACCATGCCTTCCTACGATGATCCATTGTACAGTAATTCATTT
                                                          | |||  |  ||| | |   |||| |    || || |   || |  | |   ||| | ||  ||  |  |  |  |   ||||||||||| || || || || ||||||||||| ||||||||||| |||||||| ||||| ||||||| ||||||  ||||    ||||| || || |||
------------------------------------------------------gtaattcctcatccttttaccactaaatattgtcttttgttg--tgagctgttatttaagctaagtttgatgttattgtatttagATATGGCACAGAGTTCTATATCCTTCACCGGTACCCTTTGGCTGTAAGGCCATTCTATACAATGCCTTGCTACGACAATCCTGCATACAGCAACTCGTTT

upper sequence: Vv04s0008g03010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G34070.1 (Glycine max), 3'ss of exon 7
gtaatttaattttccttacgatcttgcacatacctttcttgttcatccctttttaccttcccttttaatttaatcttgaaatttaaaattctggtaaatgtgtggatgactaaaccaaaatt--ttcttctcaacacagATATGGCACTGAATTTTACATACTTCACCGGTATCCTTTGGCTGTTAGGCCATTTTATACCATGCCTTCCTACGATGATCCATTGTACAGTAATTCATTT
                                                          | |||| |  ||| |     |||| |    || || |   || |  | |  |||| | ||  ||  |  |  |  |   ||||||||||| || || || || ||||| ||||| ||||||||| | |||||||||||||| ||||||| ||| ||  |||||   ||||| || || |||
------------------------------------------------------gtaattccttgtctttttactactaaatattgtcttttgttg--tgagctgttacctaagctaagtttgctgttattgtatttagATATGGCACGGAGTTCTATATCCTTCATCGGTACCCTTTGGCTATAAGGCCATTTTATACAATGCCTTGCTATGACAATCCAGCATACAGCAACTCGTTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83275497|gb|DV939505.1|DV939505
EST:     GACCTGAACACAGAAGCAGAGAGAAAACTTGGCCAGCTAGTTCTGGAGAA                         ATATGGCACTGAATTTTACATACTTCACCGGTATCCTTTGGCTGTTAGGCC
genomic: GACCTGAACACAGAAGCAGAGAGAAAACTTGGCCAGCTAGTTCTGGAGAAgtaatttaat ... ctcaacacagATATGGCACTGAATTTTACATACTTCACCGGTATCCTTTGGCTGTTAGGCC
EST: gi|30298639|gb|CB975433.1|CB975433
EST:     GACCTGAACACAGAAGCAGAGAGAAAACTTGGCCAGCTAGTTCTGGAGAA                         ATATGGCACTGAATTTTACATACTTCACCAGTATCCTTTGGCTGTTAGGCC
genomic: GACCTGAACACAGAAGCAGAGAGAAAACTTGGCCAGCTAGTTCTGGAGAAgtaatttaat ... ctcaacacagATATGGCACTGAATTTTACATACTTCACCGGTATCCTTTGGCTGTTAGGCC
EST: gi|33408329|gb|CF213956.1|CF213956
EST:     GACCTGAACACAGAAGCAGAGAGAAAACTTGGCCAGCTAGTTCTGGAGAA                         ATATGGCACTGAATTTTACATACTTCACCGGTATCCTTTGGCTGTTAGGCC
genomic: GACCTGAACACAGAAGCAGAGAGAAAACTTGGCCAGCTAGTTCTGGAGAAgtaatttaat ... ctcaacacagATATGGCACTGAATTTTACATACTTCACCGGTATCCTTTGGCTGTTAGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaaattctggtaaatgtgtggatgactaaaccaaaattttcttctcaacacagATATGGCACTGAATTTTACATACTTCACCGGTATCCTTTGGCTGTTAGGCCATTTTATACCATGCCTTCCTACGATGATCCATTGTACAGTAATTCATTT
                         gactaaa  putative branch site (score: 2)
                                      ttttcttctc  putative PPT
                            taaaccaaaatttt  TA-rich tract