Sequence
atgc intronic sequence ATGC exonic sequence...aaaaaaaaaaaatgttataaaagtgactatacaactaacatttttcttaattagaaggtttttttcatggacattaattaatttttaaataaaattgcagATGGATTATTTACTAGGAAAAAACCCGGAAGGAAGATCATACATGGTTGGATTTGGAAACAACCCCCCAACACAAGCACACCATAGGGGAGCCTCAGTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g02020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G05930.1 (Glycine max), 3'ss of exon 7
-----aaaaaaaaaaaatgtta--taaaagtgac-tatacaactaacatttttc--ttaattagaaggtttttt--tcatggac--attaattaatttttaaataaaattgca---------gATGGATTATTTACTAGGAAAAAACCCGGAAGGAAGATCATACATGGTTGGATTTGGAAACAACCCCCCAACACAAGCACACCATAGGGGAGCCTCAGTTC
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gtcagtacatatatatacattaattaaatattacatatacatttgaaaacaaacaattaattagtacgtactataaacacagactaattgattaattgggtggtgaaattgcaatttgtacagATGGATTACATACTAGGGAACAACCCTGAAGGAAGATCATACATGGTAGGATTTGGAAAGAACCCACCAACGCAAGCTCACCATAGAGGTGCTTCCGTTT
upper sequence: Vv04s0008g02020.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G05950.1 (Glycine max), 3'ss of exon 7
---------------------------------------------aaaaaaaaaaaatgtta--taaaagtgac-tatacaactaacatttttcttaattagaaggtttttttcatggac--attaattaatttttaaataaaattgca---------gATGGATTATTTACTAGGAAAAAACCCGGAAGGAAGATCATACATGGTTGGATTTGGAAACAACCCCCCAACACAAGCACACCATAGGGGAGCCTCAGTTC
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gttagtacacacacacacacacacacacatatatatatatatatatatacacacacacattagttaaatattacatatacaagacatagactattcgattaattaatctaaaatatagacttattgattaattgggtggtgaaattgcaatttgcacagATGGATTACATACTAGGGAAAAACCCTGAAAGAAGATCTTACATGGTTGGATTTGGAAAGAACCCACCAACGCAGGCTCACCATAGAGGTGCTTCGGTGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttaattagaaggtttttttcatggacattaattaatttttaaataaaattgcagATGGATTATTTACTAGGAAAAAACCCGGAAGGAAGATCATACATGGTTGGATTTGGAAACAACCCCCCAACACAAGCACACCATAGGGGAGCCTCAGTTC
aattaat putative branch site (score: 3)
tttttttcatggacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaaaaaaaaatgttataaaagtgactatacaactaacatttttcttaattagaaggtttttttcatggacattaattaatttttaaataaaattgcagATGGATTATTTACTAGGAAAAAACCCGGAAGGAAGATCATACATGGTTGGATTTGGAAACAACCCCCCAACACAAGCACACCATAGGGGAGCCTCAGTTC
aaaaaaa
- - - - - - - - ataaaag
- - - - - - - - - - - - - - - -caactaa