Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattatttaatttactaggaaaaacccagcaattttttattctcaaaaaaataattttctactgatctttccatttgttgcagATGGATTATCTACTAGGAGAAAACCCAGAAGGAAGATCGTACATGGTGGGCTTCGGAAACAATCCACCCACGCACGCACACCATAGAGGGTCTTCAGTTC

Basic information

species Vitis vinifera
transcript Vv04s0008g02010.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G05950.1 (Glycine max), 3'ss of exon 7
----------------------------------------------------gtatgtattatttaat--ttac-taggaaaaacccag------caattttttattctcaaaaaaataattttctactgatct----------ttccatttgttgcagATGGATTATCTACTAGGAGAAAACCCAGAAGGAAGATCGTACATGGTGGGCTTCGGAAACAATCCACCCACGCACGCACACCATAGAGGGTCTTCAGTTC
                                                      |   |||| ||||   |||| ||   || ||  ||      | |||  ||| ||| ||| | | | || |  | | ||            || || ||    |||||||||||  |||||||  ||||||| ||| ||||||| |||||||| || || ||||| || ||||| ||||| || |||||||||||  |||| || |
gttagtacacacacacacacacacacacatatatatatatatatatatacacacacacattagttaaatattacatatacaagacatagactattcgattaattaatctaaaatatagacttattgattaattgggtggtgaaattgcaatttgcacagATGGATTACATACTAGGGAAAAACCCTGAAAGAAGATCTTACATGGTTGGATTTGGAAAGAACCCACCAACGCAGGCTCACCATAGAGGTGCTTCGGTGC

upper sequence: Vv04s0008g02010.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G05930.1 (Glycine max), 3'ss of exon 7
-----------------------gtatgtattattta---atttactaggaaaaacccagcaattttttattctcaaaaaaa----------taattttctactgatctttccatttgttgcagATGGATTATCTACTAGGAGAAAACCCAGAAGGAAGATCGTACATGGTGGGCTTCGGAAACAATCCACCCACGCACGCACACCATAGAGGGTCTTCAGTTC
                        ||  |||||  ||   ||||   |  ||| |   |   | |   || | | || | |           |||||   |  |||  || | ||||||  |||||||||||  |||||||  | ||||| ||||||||||| |||||||| || || ||||| || ||||| ||||| || |||||||||||  |||| ||| 
gtcagtacatatatatacattaattaaatattacatatacatttgaaaacaaacaattaattagtacgtactataaacacagactaattgattaattgggtggtgaaattgcaatttgt-acagATGGATTACATACTAGGGAACAACCCTGAAGGAAGATCATACATGGTAGGATTTGGAAAGAACCCACCAACGCAAGCTCACCATAGAGGTGCTTCCGTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaattttttattctcaaaaaaataattttctactgatctttccatttgttgcagATGGATTATCTACTAGGAGAAAACCCAGAAGGAAGATCGTACATGGTGGGCTTCGGAAACAATCCACCCACGCACGCACACCATAGAGGGTCTTCAGTTC
                               tactgat  putative branch site (score: 2)
                                     tctttccatttgtt  CT-rich tract
     tttttattctcaaaaa  TA-rich tract