1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cctaccagttagaatgcaatgtgaatttatttagaggagtaatacccttctgctggatccagaatttgacagcttttttacttgtgtgcattatggacagTATTGTGCAATGGGACTTGGTTGGGTTGGACTGGATTTTCGGGGATTGCTCCCATCTCTTTTTGAAGA
species | Vitis vinifera |
transcript | Vv04s0008g01350.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCAAGATAACTGAAGGCGGGTCTTTGTCAAATATCCTGGACCAGTGCATG TATTGTGCAATGGGACTTGGTTGGGTTGGACTGGATTTTCGGGGATTGCTCEST: gi|71874943|gb|DT023998.1|DT023998
genomic: CCAAGATAACTGAAGGCGGGTCTTTGTCAAATATCCTGGACCAGTGCATGgtgagaacat ... ttatggacagTATTGTGCAATGGGACTTGGTTGGGTTGGACTGGATTTTCGGGGATTGCTC
EST: CCAAGATAACTGAAGGCGGGTCTTTGTCAAATATCCTGGACCAGTGCATG TATTGTGCAATGGGACTTGGTTGGGTTGGACTGGATTTTCGGGGATTGCTCEST: gi|110357152|gb|EC920501.1|EC920501
genomic: CCAAGATAACTGAAGGCGGGTCTTTGTCAAATATCCTGGACCAGTGCATGgtgagaacat ... ttatggacagTATTGTGCAATGGGACTTGGTTGGGTTGGACTGGATTTTCGGGGATTGCTC
EST: CCAAGATAACTGAAGGCGGGTCTTTGTCAAATATCCTGGACCAGTGCATG TATTGTGCAATGGGACTTGGTTGGGTTGGACTGGATTTTCGGGGATTGCTC
genomic: CCAAGATAACTGAAGGCGGGTCTTTGTCAAATATCCTGGACCAGTGCATGgtgagaacat ... ttatggacagTATTGTGCAATGGGACTTGGTTGGGTTGGACTGGATTTTCGGGGATTGCTC
ccttctgctggatccagaatttgacagcttttttacttgtgtgcattatggacagTATTGTGCAATGGGACTTGGTTGGGTTGGACTGGATTTTCGGGGATTGCTCCCATCTCTTTTTGAAGA
atttgac putative branch site (score: 4)
ttttttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctaccagttagaatgcaatgtgaatttatttagaggagtaatacccttctgctggatccagaatttgacagcttttttacttgtgtgcattatggacagTATTGTGCAATGGGACTTGGTTGGGTTGGACTGGATTTTCGGGGATTGCTCCCATCTCTTTTTGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
cctacca
- - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - - - - cccttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggatcca