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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttggagccgtctctatgctgtctttttgcttatgtgaacctctatttccttctctggtttctatttatgaaataaatgaaaggcaatgatttttctttacagGGTGGTCCGCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAG

Basic information

species Vitis vinifera
transcript Vv04s0008g00770.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G09640.1 (Glycine max), 3'ss of exon 4
----------------------------------------gtttgttggagccgtctctatgctgtctttttgcttatgtga-acctctatttccttctctggtttctatttatgaaataaatgaaaggcaatgatttttctttacagGGTGGTCCGCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAG
                                         | |  | |||  |  |  || || |          || | | |    ||| || |  |    || ||| || ||  ||      |  |  |  ||| | |     |||| ||||| |||||||||||||| || |||||  |||| ||||| ||| ||||||| || |||||||| ||   |||||| || |||
gtaaattgggaatgcccctctattagttctcttgtaactattctaattgaggtgcatggatcctatgcacccatggatttaatatgcatatgtcttctttaccttcctacttttgtgattttgatagtgttagaattgtcc-----agGGAGGTCCTCATAACCACACAATTGGAGGACTAGCAGTTTGCTTGAAGTATGCCCAGTCTCCAGAATTTAAAAATTACCAAAATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877324|gb|DT026379.1|DT026379
EST:     GAGTTGACTTAGAATCTGCCATCAACAATGCTGTTTTTCCAGGTTTACAG                         GGTGGTCCTCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCAT
genomic: GAGTTGACTTAGAATCTGCCATCAACAATGCTGTTTTTCCAGGTTTACAGgtttgttgga ... ttctttacagGGTGGTCCGCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCAT
EST: gi|110361720|gb|EC925214.1|EC925214
EST:     GAGTTGACTTAGAATCTGCCATCAACAATGCTGTTTTTCCAGGTTTACAG                         GGTGGTCCTCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCAT
genomic: GAGTTGACTTAGAATCTGCCATCAACAATGCTGTTTTTCCAGGTTTACAGgtttgttgga ... ttctttacagGGTGGTCCGCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCAT
EST: gi|110390273|gb|EC955175.1|EC955175
EST:     GAGTTGACTTAGAATCTGCCATCAACAATGCTGTTTTTCCAGGTTTACAG                         GGTGGTCCTCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCAT
genomic: GAGTTGACTTAGAATCTGCCATCAACAATGCTGTTTTTCCAGGTTTACAGgtttgttgga ... ttctttacagGGTGGTCCGCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCAT
EST: gi|110384184|gb|EC948603.1|EC948603
EST:     GAGTTGACTTAGAATCTGCCATCAACAATGCTGTTTTTCCAGGTTTACAG                         GGTGGTCCTCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCAT
genomic: GAGTTGACTTAGAATCTGCCATCAACAATGCTGTTTTTCCAGGTTTACAGgtttgttgga ... ttctttacagGGTGGTCCGCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCAT
EST: gi|110385950|gb|EC950512.1|EC950512
EST:     GAGTTGACTTAGAATCTGCCATCAACAATGCTGTTTTTCCAGGTTTACAG                         GGTGGTCCTCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCAT
genomic: GAGTTGACTTAGAATCTGCCATCAACAATGCTGTTTTTCCAGGTTTACAGgtttgttgga ... ttctttacagGGTGGTCCGCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttctctggtttctatttatgaaataaatgaaaggcaatgatttttctttacagGGTGGTCCGCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAG
                                          tttttctttac  CT-rich tract
          tttctatttatgaaat  TA-rich tract