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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcattgccaaagataggttgccatggtcgtgttgttgcttcaagtgatgattttcttttgatatgaattaacagTTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCTTCTGATCACAA

Basic information

species Vitis vinifera
transcript Vv04s0008g00760.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00760.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G25950.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaatttcat-tgccaaagataggttgccatgg--tcgtgttgttgcttcaagtgatgattttcttttgatatgaattaacagTTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCTTCTGATCACAA
|||| ||    | | || | |   |    ||    | || | |||  ||   || | |  || |  |||||     ||||||||||||  | ||||||||||| |||||||| ||||| ||||  ||||||||||| ||||||||
gtaagtttgcatacaaatgctgtatatttattatattgtatggttagtt--ggttaagtcttacccttgatg-atcttaacagTTGAAAAGAGATGTTGTTGCGACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110708832|gb|EE086825.1|EE086825
EST:     CTGAGACAACTCAGATACGCTATATTGGGTTGAAAGGTGAAGCCACCCAG                         TTGAAGCGGGATGTTGTTGCAACAATCATGTATGAAATTACTCCAAATCCT
genomic: GTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAGgtaatttcat ... gaattaacagTTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
EST: gi|110700486|gb|EE078578.1|EE078578
EST:     CTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAG                         TTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
genomic: GTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAGgtaatttcat ... gaattaacagTTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
EST: gi|51050666|gb|CO818666.1|CO818666
EST:     CTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAG                         TTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
genomic: GTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAGgtaatttcat ... gaattaacagTTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
EST: gi|349826052|gb|FQ415857.1|FQ415857
EST:     CTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAG                         TTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
genomic: GTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAGgtaatttcat ... gaattaacagTTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
EST: gi|349830056|gb|FQ420316.1|FQ420316
EST:     CTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAG                         TTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
genomic: GTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAGgtaatttcat ... gaattaacagTTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
EST: gi|110362125|gb|EC925639.1|EC925639
EST:     CTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAG                         TTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
genomic: GTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAGgtaatttcat ... gaattaacagTTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
EST: gi|110394078|gb|EC958525.1|EC958525
EST:     CTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAG                         TTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
genomic: GTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAGgtaatttcat ... gaattaacagTTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
EST: gi|110372710|gb|EC936897.1|EC936897
EST:     CTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAG                         TTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT
genomic: GTGAGACAACTCAGATACGCTATATTGGGTTGAAGGGTGAAGCCACCCAGgtaatttcat ... gaattaacagTTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccatggtcgtgttgttgcttcaagtgatgattttcttttgatatgaattaacagTTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCTTCTGATCACAA
                                    ttttgat  putative branch site (score: 4)
                              attttcttttgatatg  TA-rich tract